Factsheet for Zm00001d029512_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013699_P001
Zm00001d018824_P001
Zm00001d027317_P015
Zm00001d031061_P007
Zm00001d032681_P004
Zm00001d033246_P004
Zm00001d041489_P009
Zm00001d048527_P028
Zm00001d049529_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45610.1	Zm00001d027317_P015	AT5G60690.1	21245844
AT3G45610.1	Zm00001d032681_P004	AT5G60690.1	21245844
AT3G45610.1	Zm00001d048527_P028	AT5G60690.1	21245844
AT3G45610.1	Zm00001d049529_P001	AT5G60690.1	21245844
AT5G60200.1	Zm00001d013699_P001	AT2G34710.1	21245844
AT5G60200.1	Zm00001d018824_P001	AT2G34710.1	21245844
AT5G60200.1	Zm00001d031061_P007	AT2G34710.1	21245844
AT5G60200.1	Zm00001d033246_P004	AT2G34710.1	21245844
AT5G60200.1	Zm00001d041489_P009	AT2G34710.1	21245844
AT5G60200.1	Zm00001d027317_P015	AT5G60690.1	21245844
AT5G60200.1	Zm00001d032681_P004	AT5G60690.1	21245844
AT5G60200.1	Zm00001d048527_P028	AT5G60690.1	21245844
AT5G60200.1	Zm00001d049529_P001	AT5G60690.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017575_P001	Maize	nucleus	30.48	28.61
Zm00001d051439_P001	Maize	nucleus	29.34	28.07
AT5G60200.1	Thale cress	nucleus	20.23	27.63
CDY31568	Canola	nucleus	20.23	27.52
Zm00001d017788_P001	Maize	nucleus	22.51	27.43
Zm00001d051577_P001	Maize	nucleus	23.08	27.27
CDX80191	Canola	nucleus	19.94	27.24
Bra002504.1-P	Field mustard	nucleus	19.94	27.13
Bra020261.1-P	Field mustard	nucleus	18.23	26.89
Zm00001d051700_P001	Maize	mitochondrion	19.37	26.88
Zm00001d026096_P001	Maize	nucleus, plastid	27.07	26.69
CDX71050	Canola	nucleus	18.8	26.09
CDY09221	Canola	nucleus	19.09	25.97
Zm00001d034653_P001	Maize	nucleus	15.95	25.0
Zm00001d017900_P001	Maize	nucleus	21.08	24.67
AT3G45610.1	Thale cress	nucleus	17.09	24.49
PGSC0003DMT400058729	Potato	nucleus	13.68	24.37
CDX88742	Canola	nucleus	18.52	23.47
KRH50082	Soybean	nucleus	19.09	23.26
Bra006675.1-P	Field mustard	nucleus	18.23	23.1
Zm00001d030727_P002	Maize	nucleus	21.08	21.7
GSMUA_Achr1P17670_001	Banana	nucleus	13.39	21.66
Zm00001d028625_P002	Maize	nucleus	23.36	21.19
Zm00001d013783_P001	Maize	nucleus	17.38	20.96
Zm00001d047802_P001	Maize	nucleus	23.08	20.88
Zm00001d041549_P001	Maize	nucleus	20.23	20.7
Zm00001d002642_P001	Maize	nucleus	28.21	20.67
Zm00001d012280_P001	Maize	nucleus	19.37	20.12
Zm00001d042736_P001	Maize	nucleus	18.52	20.0
VIT_00s0652g00010.t01	Wine grape	nucleus	16.81	20.0
KRH20417	Soybean	nucleus	18.52	19.82
Zm00001d038281_P001	Maize	mitochondrion, nucleus	18.23	19.57
Zm00001d033093_P001	Maize	nucleus	19.37	18.89
Zm00001d021591_P001	Maize	nucleus	18.52	18.06
Zm00001d011058_P001	Maize	nucleus	17.38	18.05
GSMUA_Achr5P12010_001	Banana	nucleus	18.23	18.03
Solyc02g078620.1.1	Tomato	nucleus	14.53	17.96
Zm00001d006463_P001	Maize	plastid	17.66	17.66
Zm00001d034163_P001	Maize	nucleus	17.95	17.45
Zm00001d034651_P002	Maize	nucleus	20.51	17.43
Zm00001d013200_P001	Maize	nucleus, plastid	18.23	17.34
Zm00001d035651_P001	Maize	nucleus	17.66	16.99
TraesCS1B01G185700.1	Wheat	cytosol	8.83	14.29
TraesCS6A01G233700.1	Wheat	cytosol, mitochondrion, nucleus	8.26	13.36
Zm00001d012963_P001	Maize	plastid, vacuole	21.08	11.78
Os03t0276300-00	Rice	cytosol	3.13	7.91
HORVU2Hr1G047750.4	Barley	plastid	4.84	7.52

Protein Annotations

EntrezGene:100193126	MapMan:15.5.1.5	UniProt:B4FDW7	EMBL:BT035305	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003851	EMBL:KJ726891	ProteinID:ONL98883.1	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF74	UniParc:UPI0001608AF8	EnsemblPlantsGene:Zm00001d029512
EnsemblPlants:Zm00001d029512_P001	EnsemblPlants:Zm00001d029512_T001	InterPro:Znf_Dof	SEG:seg	:	:

Description

C2C2-Dof-transcription factor 36Dof zinc finger protein DOF4.6

Coordinates

chr1:+:73971569..73973965

Molecular Weight (calculated)

36734.1 Da

IEP (calculated)

4.722

GRAVY (calculated)

-0.769

Length

351 amino acids

Sequence
(BLAST)

001: MDMNSNANNS TAAAASAPIN NQQEAVVSSP TRKEQARNPK KARAAPQQAG GSGEPRPRPP PDAAHSCPRC SSTNTKFCYY NNYNLTQPRY FCKTCRRYWT
101: HGGTLRNVPV GGGCRRNKRA SSSSSPFPGP SSTAATSAAM EKTVSTRLML MATSTMAMPS PTAGLFVPDD MSPAFTPTTG GSGFDDLAGM DEQHQQGFLP
201: FSPLSLSDQA PELAPGGGGD TTPSFLDMLT GGYLDGGGYG GMSGGSDAMD MPFSLPEMGP PTTDPMPFQL QWTSSELDNY INDDGGYAAG PAAGVQQQQQ
301: QQQQQINGGD HQKQDENKEA GNGKGNDDGG GGSSSVYSFW MNTSGSDGAE G

Best Arabidopsis Sequence Match ( AT5G60200.1 )
(BLAST)

001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM

Arabidopsis Description

DOF5.3Dof zinc finger protein DOF5.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84TE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.