Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G185700.1 | Wheat | cytosol | 98.16 | 98.16 |
| TraesCS2A01G402200.1 | Wheat | nucleus | 94.93 | 54.5 |
| TraesCS6A01G255500.1 | Wheat | nucleus | 54.38 | 30.1 |
| CDY08776 | Canola | nucleus | 4.61 | 11.63 |
| HORVU2Hr1G047750.4 | Barley | plastid | 9.68 | 9.29 |
| Zm00001d029512_P001 | Maize | nucleus | 13.36 | 8.26 |
| Os03t0276300-00 | Rice | cytosol | 5.07 | 7.91 |
| TraesCS5A01G155900.1 | Wheat | nucleus | 11.52 | 7.4 |
| TraesCS5A01G078100.1 | Wheat | nucleus | 11.06 | 7.02 |
| Bra020261.1-P | Field mustard | nucleus | 7.37 | 6.72 |
| KRH50082 | Soybean | nucleus | 8.76 | 6.6 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 9.22 | 6.54 |
| Bra002504.1-P | Field mustard | nucleus | 7.37 | 6.2 |
| KRH20417 | Soybean | nucleus | 9.22 | 6.1 |
| TraesCS3A01G377000.1 | Wheat | nucleus | 9.22 | 6.04 |
| TraesCS2A01G079200.1 | Wheat | nucleus | 8.76 | 5.83 |
| TraesCS2A01G225900.1 | Wheat | nucleus, plastid | 9.22 | 5.62 |
| TraesCS6A01G287700.1 | Wheat | nucleus | 7.37 | 5.5 |
| TraesCS1A01G275000.1 | Wheat | nucleus | 7.83 | 5.38 |
| TraesCS5A01G479400.1 | Wheat | nucleus | 11.52 | 5.35 |
| Bra006675.1-P | Field mustard | nucleus | 6.45 | 5.05 |
| TraesCS1A01G035200.1 | Wheat | nucleus | 8.29 | 4.99 |
| AT5G60200.1 | Thale cress | nucleus | 5.53 | 4.67 |
| Solyc02g078620.1.1 | Tomato | nucleus | 5.99 | 4.58 |
| PGSC0003DMT400058729 | Potato | nucleus | 4.15 | 4.57 |
| AT3G45610.1 | Thale cress | nucleus | 5.07 | 4.49 |
| TraesCS4A01G097800.1 | Wheat | nucleus | 7.83 | 4.44 |
| TraesCS7A01G213400.1 | Wheat | nucleus | 5.53 | 4.23 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 5.07 | 3.73 |
| TraesCS3A01G532200.1 | Wheat | nucleus | 5.99 | 3.66 |
| TraesCS3A01G532100.1 | Wheat | nucleus | 5.99 | 3.43 |
| TraesCS5A01G401800.1 | Wheat | nucleus | 5.99 | 3.41 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 2.76 | 2.76 |
| TraesCS3A01G532000.1 | Wheat | nucleus | 4.61 | 2.69 |
| TraesCS3A01G539000.1 | Wheat | nucleus | 3.23 | 2.6 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 3.69 | 2.25 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G233700.1 | EnsemblPlantsGene:TraesCS6A01G233700 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF28 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:+:441441619..441442272
Molecular Weight (calculated)
21722.2 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.450
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGAAPNKNQ KLAHEGAAHD LNPAFPHHQG GMQAQADYMA FPSLESSSMC NPGGGAMAGN GARAGGALSA MELLRSTGCY MPLQMPMQMP GEYGAAGFSL
101: GEFRAPAPPQ SQSLLGFSLD AHGTVGGAST AGYGSSAGMQ GMQDRSGRLP FAFDDLKPTA NSGAGGGESG DGSGAGVDGG DHQFEPGNKE QQGNGTPVGQ
201: PDTPGFWNGM IGGGGTW
101: GEFRAPAPPQ SQSLLGFSLD AHGTVGGAST AGYGSSAGMQ GMQDRSGRLP FAFDDLKPTA NSGAGGGESG DGSGAGVDGG DHQFEPGNKE QQGNGTPVGQ
201: PDTPGFWNGM IGGGGTW
001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC
Arabidopsis Description
DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.