Factsheet for TraesCS3A01G532000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G537400.1	Wheat	nucleus	97.58	96.54
TraesCS3B01G608800.1	Wheat	nucleus	95.43	94.41
HORVU3Hr1G116220.1	Barley	nucleus, plastid	95.16	89.17
TraesCS3A01G539000.1	Wheat	nucleus	55.65	76.95
Os05t0112200-01	Rice	nucleus	40.32	51.72
Zm00001d035651_P001	Maize	nucleus	47.58	48.49
TraesCS1A01G035200.1	Wheat	nucleus	47.04	48.48
Zm00001d011058_P001	Maize	nucleus	42.47	46.75
KXG21095	Sorghum	nucleus	47.85	46.23
TraesCS3A01G532200.1	Wheat	nucleus	30.65	32.11
TraesCS3A01G532100.1	Wheat	nucleus	30.91	30.34
TraesCS5A01G078100.1	Wheat	nucleus	26.34	28.66
TraesCS4A01G097800.1	Wheat	nucleus	28.23	27.42
KRH46814	Soybean	nucleus	26.88	27.25
KRG99864	Soybean	nucleus	25.81	26.45
KRH70477	Soybean	nucleus	26.08	26.15
TraesCS5A01G479400.1	Wheat	nucleus	31.99	25.48
TraesCS6A01G287700.1	Wheat	nucleus	16.13	20.62
TraesCS7A01G213400.1	Wheat	nucleus	15.59	20.42
TraesCS2A01G079200.1	Wheat	nucleus	17.2	19.63
TraesCS1A01G275000.1	Wheat	nucleus	16.67	19.62
TraesCS6A01G274000.1	Wheat	nucleus	16.13	19.61
TraesCS2A01G225900.1	Wheat	nucleus, plastid	17.74	18.54
TraesCS3A01G377000.1	Wheat	nucleus	15.86	17.82
TraesCS2A01G402200.1	Wheat	nucleus	17.74	17.46
TraesCS5A01G401800.1	Wheat	nucleus	17.47	17.06
TraesCS6A01G255500.1	Wheat	nucleus	17.74	16.84
TraesCS5A01G155900.1	Wheat	nucleus	14.52	15.98
TraesCS6A01G233700.1	Wheat	cytosol, mitochondrion, nucleus	2.69	4.61

Protein Annotations

EnsemblPlants:TraesCS3A01G532000.1	EnsemblPlantsGene:TraesCS3A01G532000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31992	PANTHER:PTHR31992:SF59	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr3A:+:744879055..744880377

Molecular Weight (calculated)

38543.2 Da

IEP (calculated)

8.410

GRAVY (calculated)

-0.732

Length

372 amino acids

Sequence
(BLAST)

001: MIFPPAFLDS SSCWNTNHNQ LQLQQIGCNT HVTTTPSPAG HGDGGGSNNN NHGQQEGLMA TAGAGGGGGE GGGGDGDSAG GGNNKPMSMS ERARLARVPQ
101: PEPGLNCPRC DSTNTKFCYF NNYSLTQPRH FCRACRRYWT RGGALRNVPV GGGYRRHAKR SAKPKAGSAG SGSAAAGTSS ATSTTPSTTA CTTGTATAPP
201: ALQYSMFGSA PPHGSRFANS FDPASLGLSF PARLLFPDSG AYAADGGAQQ QHHHHQGNGN GMEQWAAAQM QSFPFLHAMD HQMSGNQPPA SAMPTTMAAM
301: QGMFHLGLQS GGGGGNGDDG GNQQFHHPPA KRDYHQQQQQ DYPSSRGMYG DVVNGNGGGF NFYSSTSNAA GN

Best Arabidopsis Sequence Match ( AT3G55370.1 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
301: TSWGGNSSWT GFTSNNSTGH LSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.