Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G493000.1 | Wheat | nucleus | 94.0 | 96.48 |
| TraesCS5B01G492600.1 | Wheat | nucleus | 92.72 | 95.8 |
| HORVU5Hr1G113220.6 | Barley | nucleus | 91.43 | 94.89 |
| Os03t0821200-00 | Rice | nucleus | 62.1 | 70.05 |
| KXG37254 | Sorghum | nucleus | 62.74 | 67.36 |
| Zm00001d034651_P002 | Maize | nucleus | 58.03 | 65.62 |
| CDY07781 | Canola | nucleus | 23.13 | 50.47 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 25.91 | 48.99 |
| VIT_08s0007g00180.t01 | Wine grape | nucleus | 34.9 | 47.25 |
| Bra000008.1-P | Field mustard | nucleus | 26.55 | 42.32 |
| CDX93365 | Canola | nucleus | 27.62 | 41.75 |
| AT2G37590.1 | Thale cress | nucleus | 29.34 | 41.52 |
| Solyc10g086440.1.1 | Tomato | nucleus | 32.12 | 41.44 |
| Bra005181.1-P | Field mustard | nucleus | 28.69 | 41.23 |
| CDY65260 | Canola | nucleus | 27.19 | 41.1 |
| CDX79743 | Canola | nucleus | 25.7 | 40.96 |
| CDX74947 | Canola | nucleus | 28.48 | 40.92 |
| Bra017171.1-P | Field mustard | nucleus | 26.98 | 40.78 |
| CDX91370 | Canola | nucleus | 28.27 | 40.62 |
| PGSC0003DMT400049288 | Potato | nucleus | 32.33 | 40.37 |
| TraesCS5A01G078100.1 | Wheat | nucleus | 27.19 | 37.13 |
| TraesCS4A01G097800.1 | Wheat | nucleus | 29.98 | 36.55 |
| TraesCS3A01G539000.1 | Wheat | nucleus | 20.13 | 34.94 |
| TraesCS3A01G532000.1 | Wheat | nucleus | 25.48 | 31.99 |
| TraesCS1A01G035200.1 | Wheat | nucleus | 24.2 | 31.3 |
| TraesCS3A01G532200.1 | Wheat | nucleus | 23.77 | 31.27 |
| TraesCS3A01G532100.1 | Wheat | nucleus | 23.98 | 29.55 |
| TraesCS2A01G079200.1 | Wheat | nucleus | 17.34 | 24.85 |
| TraesCS2A01G225900.1 | Wheat | nucleus, plastid | 18.84 | 24.72 |
| TraesCS6A01G274000.1 | Wheat | nucleus | 15.85 | 24.18 |
| TraesCS6A01G255500.1 | Wheat | nucleus | 20.13 | 23.98 |
| TraesCS2A01G402200.1 | Wheat | nucleus | 19.27 | 23.81 |
| TraesCS6A01G287700.1 | Wheat | nucleus | 14.56 | 23.37 |
| TraesCS1A01G275000.1 | Wheat | nucleus | 14.78 | 21.84 |
| TraesCS3A01G377000.1 | Wheat | nucleus | 15.42 | 21.75 |
| TraesCS7A01G213400.1 | Wheat | nucleus | 13.06 | 21.48 |
| TraesCS5A01G401800.1 | Wheat | nucleus | 15.85 | 19.42 |
| TraesCS5A01G155900.1 | Wheat | nucleus | 11.99 | 16.57 |
| TraesCS6A01G233700.1 | Wheat | cytosol, mitochondrion, nucleus | 5.35 | 11.52 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G479400.1 | EnsemblPlantsGene:TraesCS5A01G479400 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | ncoils:Coil | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | PFAM:PD007478 |
| PFAM:PF02701 | PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : |
Description
No Description!
Coordinates
chr5A:+:652646927..652648585
Molecular Weight (calculated)
47912.6 Da
IEP (calculated)
9.612
GRAVY (calculated)
-0.673
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSSVPLYH DPPNWNQNHN QQQQQQQLQQ QQQQQQQQLS HHGQMFASGG GGGGVDMHHH HHQQQQQQQY QQQQQHQHQH QLRPPVPPPG ALMAPRPDGM
101: GSAVALSGAG GGGGGAGGGP TGGAVVRPGS MTDRARMAKI PQPEPGLKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGTLRNV PVGGGCRRNK
201: RTKSSKSSSS AASASGGGTS SSTTSSTTTA GGANGNGNGN GNRNGSSAAA AAGAMMSSQG QGHAQMPFFG SLHPLGAGSG DHYGTGASRL GFPGLINSLD
301: PVDYQLGGGG AAAAAMGLSE QWRLPQMQQF PFLGRADGMH QQQQQMAGLY PFDATDASGF AGEMMGGVGG SKQLVPGSAG LITQLASVKM EDNPPSNNAM
401: AGAASAREFL GLPGNIQFWG GGNNGAGGND NGGSHSSGTV APGGAGGGGG WVDQLPGFNS SSSGNIL
101: GSAVALSGAG GGGGGAGGGP TGGAVVRPGS MTDRARMAKI PQPEPGLKCP RCESTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGTLRNV PVGGGCRRNK
201: RTKSSKSSSS AASASGGGTS SSTTSSTTTA GGANGNGNGN GNRNGSSAAA AAGAMMSSQG QGHAQMPFFG SLHPLGAGSG DHYGTGASRL GFPGLINSLD
301: PVDYQLGGGG AAAAAMGLSE QWRLPQMQQF PFLGRADGMH QQQQQMAGLY PFDATDASGF AGEMMGGVGG SKQLVPGSAG LITQLASVKM EDNPPSNNAM
401: AGAASAREFL GLPGNIQFWG GGNNGAGGND NGGSHSSGTV APGGAGGGGG WVDQLPGFNS SSSGNIL
001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR
Arabidopsis Description
DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.