Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5D01G493000.1 | Wheat | nucleus | 97.12 | 96.48 |
TraesCS5A01G479400.1 | Wheat | nucleus | 95.8 | 92.72 |
HORVU5Hr1G113220.6 | Barley | nucleus | 92.04 | 92.44 |
Os03t0821200-00 | Rice | nucleus | 61.73 | 67.39 |
KXG37254 | Sorghum | nucleus | 63.72 | 66.21 |
Zm00001d034651_P002 | Maize | nucleus | 57.96 | 63.44 |
CDY07781 | Canola | nucleus | 23.67 | 50.0 |
GSMUA_Achr6P33410_001 | Banana | nucleus | 26.55 | 48.58 |
VIT_08s0007g00180.t01 | Wine grape | nucleus | 35.18 | 46.09 |
Bra000008.1-P | Field mustard | nucleus | 27.21 | 41.98 |
AT2G37590.1 | Thale cress | nucleus | 30.31 | 41.52 |
CDX93365 | Canola | nucleus | 28.1 | 41.1 |
Bra005181.1-P | Field mustard | nucleus | 29.2 | 40.62 |
CDX79743 | Canola | nucleus | 26.33 | 40.61 |
Solyc10g086440.1.1 | Tomato | nucleus | 32.52 | 40.61 |
CDY65260 | Canola | nucleus | 27.65 | 40.45 |
CDX74947 | Canola | nucleus | 28.98 | 40.31 |
Bra017171.1-P | Field mustard | nucleus | 27.43 | 40.13 |
CDX91370 | Canola | nucleus | 28.76 | 40.0 |
PGSC0003DMT400049288 | Potato | nucleus | 32.74 | 39.57 |
TraesCS4B01G206800.1 | Wheat | nucleus | 30.31 | 36.24 |
TraesCS5B01G087600.3 | Wheat | nucleus | 27.43 | 36.05 |
TraesCS3B01G608800.1 | Wheat | nucleus | 26.55 | 31.91 |
TraesCS1B01G045000.3 | Wheat | nucleus | 25.89 | 31.88 |
TraesCS3B01G608900.1 | Wheat | nucleus | 25.0 | 31.83 |
TraesCS3B01G609100.1 | Wheat | nucleus | 23.67 | 30.84 |
TraesCS3B01G609000.1 | Wheat | nucleus | 23.23 | 29.83 |
TraesCS2B01G094000.1 | Wheat | nucleus | 17.48 | 23.94 |
TraesCS2B01G420400.1 | Wheat | nucleus | 19.69 | 23.67 |
TraesCS6B01G301500.1 | Wheat | nucleus | 15.93 | 23.53 |
TraesCS6B01G270100.1 | Wheat | nucleus | 20.13 | 23.39 |
TraesCS2B01G249200.1 | Wheat | nucleus, plastid | 18.36 | 23.38 |
TraesCS6B01G317100.1 | Wheat | nucleus | 14.82 | 23.18 |
TraesCS3B01G409600.1 | Wheat | nucleus | 15.93 | 21.75 |
TraesCS1B01G284300.1 | Wheat | nucleus | 15.04 | 21.52 |
TraesCS7B01G120600.1 | Wheat | nucleus | 14.38 | 20.38 |
TraesCS5B01G406500.1 | Wheat | nucleus | 15.49 | 18.32 |
TraesCS5B01G154100.1 | Wheat | nucleus | 12.17 | 16.27 |
TraesCS1B01G185700.1 | Wheat | cytosol | 5.53 | 11.52 |
Protein Annotations
EnsemblPlants:TraesCS5B01G492600.1 | EnsemblPlantsGene:TraesCS5B01G492600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF66 | PFAM:PD007478 | PFAM:PF02701 |
PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : |
Description
No Description!
Coordinates
chr5B:+:660588862..660590474
Molecular Weight (calculated)
46276.9 Da
IEP (calculated)
9.419
GRAVY (calculated)
-0.588
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSSVPLYH DPPNWNQNHS QQQQQQLQQQ QQQQLSQHGQ MFASGGGGGG MEMHHHHQQQ QHQQYQQQQL QQHQLRPPVP PSGALMAPRP DGMGSPVALS
101: GAGGGGGGAG GGLTGGAVVR PGSMTDKARM AKIPQPEPGL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGTL RNVPVGGGCR RNKRTKSSKS
201: SSSAASASGG GTSSSTTSST TTAGGGNGNG STAAGAAGAM MSSQGQGHAQ MPFFGSLHPL GAGSGDHYGT GASRLGFPGL INSLDPVDYQ LGGGGAAAAA
301: MALSEQWRLP QMQQFPFFGR ADGMHQQQQQ MAGLYPFDAT DASGFAGEMM GGVGGSKQLV PGSAGLITQL ASVKMEDNPP SNNSMAGAAS AREFLGLPGN
401: IQFWGGGNNG AGGNENGGSH SSGTVAPGGA GGGGGWVDQL PGFNSSSSGN IL
101: GAGGGGGGAG GGLTGGAVVR PGSMTDKARM AKIPQPEPGL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGTL RNVPVGGGCR RNKRTKSSKS
201: SSSAASASGG GTSSSTTSST TTAGGGNGNG STAAGAAGAM MSSQGQGHAQ MPFFGSLHPL GAGSGDHYGT GASRLGFPGL INSLDPVDYQ LGGGGAAAAA
301: MALSEQWRLP QMQQFPFFGR ADGMHQQQQQ MAGLYPFDAT DASGFAGEMM GGVGGSKQLV PGSAGLITQL ASVKMEDNPP SNNSMAGAAS AREFLGLPGN
401: IQFWGGGNNG AGGNENGGSH SSGTVAPGGA GGGGGWVDQL PGFNSSSSGN IL
001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR
Arabidopsis Description
DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.