Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0019g01410.t01 | Wine grape | nucleus | 58.26 | 59.64 |
| VIT_06s0004g04520.t01 | Wine grape | nucleus | 51.01 | 55.0 |
| CDY07781 | Canola | nucleus | 33.91 | 54.67 |
| Solyc10g086440.1.1 | Tomato | nucleus | 53.91 | 51.38 |
| PGSC0003DMT400049288 | Potato | nucleus | 54.2 | 50.0 |
| Bra000008.1-P | Field mustard | nucleus | 40.0 | 47.1 |
| CDX74947 | Canola | nucleus | 43.48 | 46.15 |
| CDX91370 | Canola | nucleus | 43.48 | 46.15 |
| CDX79743 | Canola | nucleus | 39.13 | 46.08 |
| CDX93365 | Canola | nucleus | 41.16 | 45.95 |
| Bra005181.1-P | Field mustard | nucleus | 43.19 | 45.85 |
| CDY65260 | Canola | nucleus | 40.87 | 45.63 |
| Bra017171.1-P | Field mustard | nucleus | 40.58 | 45.31 |
| AT2G37590.1 | Thale cress | nucleus | 42.61 | 44.55 |
| Zm00001d034653_P001 | Maize | nucleus | 28.12 | 43.3 |
| Zm00001d034651_P002 | Maize | nucleus | 48.41 | 40.44 |
| Os03t0821200-00 | Rice | nucleus | 47.54 | 39.61 |
| KXG37254 | Sorghum | nucleus | 49.28 | 39.08 |
| HORVU5Hr1G113190.2 | Barley | nucleus, plastid | 29.28 | 35.31 |
| TraesCS5B01G492600.1 | Wheat | nucleus | 46.09 | 35.18 |
| TraesCS5D01G493000.1 | Wheat | nucleus | 46.38 | 35.16 |
| HORVU5Hr1G113220.6 | Barley | nucleus | 45.8 | 35.11 |
| TraesCS5A01G479400.1 | Wheat | nucleus | 47.25 | 34.9 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 26.38 | 31.71 |
| VIT_02s0025g02250.t01 | Wine grape | nucleus | 25.22 | 30.21 |
| VIT_06s0004g03420.t01 | Wine grape | nucleus | 24.35 | 28.38 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 23.77 | 27.8 |
| VIT_10s0003g00040.t01 | Wine grape | nucleus | 24.64 | 27.6 |
| VIT_10s0003g00030.t01 | Wine grape | nucleus | 22.9 | 26.42 |
| VIT_17s0000g04850.t01 | Wine grape | nucleus | 23.77 | 25.79 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 22.61 | 25.32 |
| Zm00001d012963_P001 | Maize | plastid, vacuole | 46.09 | 25.32 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 22.9 | 25.0 |
| VIT_18s0001g15730.t01 | Wine grape | nucleus | 19.71 | 24.2 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 22.61 | 23.08 |
| VIT_08s0105g00170.t01 | Wine grape | nucleus | 17.97 | 22.96 |
| VIT_00s0253g00060.t01 | Wine grape | nucleus | 21.45 | 21.02 |
| HORVU2Hr1G095390.1 | Barley | cytosol, mitochondrion, nucleus | 8.12 | 12.67 |
Protein Annotations
| EntrezGene:100263156 | wikigene:100263156 | MapMan:15.5.1.5 | ProteinID:CCB55598 | ProteinID:CCB55598.1 | UniProt:F6HLD4 |
| EMBL:FN595991 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR003851 |
| EntrezGene:LOC100263156 | wikigene:LOC100263156 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF61 | UniParc:UPI0002109B5F | ArrayExpress:VIT_08s0007g00180 | EnsemblPlantsGene:VIT_08s0007g00180 | EnsemblPlants:VIT_08s0007g00180.t01 |
| RefSeq:XP_002270031 | RefSeq:XP_002270031.1 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:+:14550709..14554703
Molecular Weight (calculated)
36222.6 Da
IEP (calculated)
9.228
GRAVY (calculated)
-0.516
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSSMPSYL DPANWQQPHN HEAGSSGLPN QPPPPPPPPP QPHGGGGTGS IRPGSMADRA RLANIPLPEA ALKCPRCEST NTKFCYFNNY SLSQPRHFCK
101: TCRRYWTRGG ALRNVPVGGG CRRNKRSKGS SSKSPVSGDR QAGSSSTGAI HSNCSTAEIL GLAPQIPPMR FMAPLHHLAD YGAGDIGLNY SGIPTAVGGT
201: GDMNFQIGSH LGGGSSGGAG GVGGSFLSVG GLEQWRLQQT QQFPFLGGLD PPPGLYPLEG GVEPSNYVGG SSQVRPKLTG SGLSQVASVK MEDNHEMNVA
301: RQFLGIPGND QYWGGNAWTD LASFSSSSTT ETSGVGRNRK LQLTM
101: TCRRYWTRGG ALRNVPVGGG CRRNKRSKGS SSKSPVSGDR QAGSSSTGAI HSNCSTAEIL GLAPQIPPMR FMAPLHHLAD YGAGDIGLNY SGIPTAVGGT
201: GDMNFQIGSH LGGGSSGGAG GVGGSFLSVG GLEQWRLQQT QQFPFLGGLD PPPGLYPLEG GVEPSNYVGG SSQVRPKLTG SGLSQVASVK MEDNHEMNVA
301: RQFLGIPGND QYWGGNAWTD LASFSSSSTT ETSGVGRNRK LQLTM
001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF
Arabidopsis Description
OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.