Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010397 | Potato | nucleus | 52.83 | 52.66 |
| KRH56758 | Soybean | nucleus | 47.17 | 51.37 |
| KRH03180 | Soybean | nucleus | 47.48 | 50.33 |
| KRH54755 | Soybean | nucleus | 45.6 | 47.85 |
| CDX87189 | Canola | nucleus | 37.42 | 47.6 |
| Bra035956.1-P | Field mustard | nucleus | 38.99 | 46.44 |
| CDY16836 | Canola | nucleus | 38.99 | 46.44 |
| Bra013003.1-P | Field mustard | nucleus | 40.57 | 43.88 |
| AT5G60850.1 | Thale cress | nucleus | 42.14 | 43.65 |
| CDY02191 | Canola | nucleus | 40.25 | 43.54 |
| CDY40813 | Canola | nucleus | 38.36 | 43.11 |
| KRH63162 | Soybean | nucleus | 45.91 | 42.82 |
| CDY42836 | Canola | nucleus | 37.74 | 41.96 |
| Bra029352.1-P | Field mustard | nucleus | 36.16 | 41.37 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 19.5 | 31.79 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 26.1 | 28.92 |
| VIT_02s0025g02250.t01 | Wine grape | nucleus | 26.1 | 28.82 |
| Zm00001d051700_P001 | Maize | mitochondrion | 22.64 | 28.46 |
| Os02t0726300-01 | Rice | nucleus | 24.21 | 27.3 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 20.13 | 27.0 |
| TraesCS6D01G268400.1 | Wheat | nucleus | 23.9 | 26.21 |
| TraesCS6B01G317100.1 | Wheat | nucleus | 23.58 | 25.95 |
| TraesCS6A01G287700.1 | Wheat | nucleus | 23.58 | 25.77 |
| Zm00001d017900_P001 | Maize | nucleus | 23.58 | 25.0 |
| Os06t0284500-00 | Rice | nucleus | 22.64 | 24.91 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 24.53 | 24.68 |
| KXG30845 | Sorghum | nucleus | 23.58 | 24.67 |
| TraesCS7D01G215300.1 | Wheat | nucleus | 21.7 | 24.3 |
| HORVU7Hr1G043250.2 | Barley | nucleus | 21.7 | 24.3 |
| VIT_06s0004g04520.t01 | Wine grape | nucleus | 24.21 | 24.06 |
| VIT_13s0019g01410.t01 | Wine grape | nucleus | 25.47 | 24.04 |
| TraesCS7A01G213400.1 | Wheat | nucleus | 21.38 | 23.94 |
| VIT_08s0007g00180.t01 | Wine grape | nucleus | 25.79 | 23.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.75 | 23.66 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 22.64 | 23.38 |
| VIT_10s0003g00030.t01 | Wine grape | nucleus | 21.7 | 23.08 |
| VIT_06s0004g03420.t01 | Wine grape | nucleus | 21.38 | 22.97 |
| VIT_00s0652g00010.t01 | Wine grape | nucleus | 20.75 | 22.37 |
| VIT_08s0105g00170.t01 | Wine grape | nucleus | 18.87 | 22.22 |
| VIT_10s0003g00040.t01 | Wine grape | nucleus | 21.38 | 22.08 |
| TraesCS7B01G120600.1 | Wheat | nucleus | 22.01 | 21.94 |
| VIT_18s0001g15730.t01 | Wine grape | nucleus | 18.24 | 20.64 |
| VIT_00s0253g00060.t01 | Wine grape | nucleus | 22.01 | 19.89 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 20.44 | 19.23 |
Protein Annotations
| EntrezGene:100262950 | wikigene:100262950 | MapMan:15.5.1.5 | ProteinID:CCB43158 | ProteinID:CCB43158.1 | ncoils:Coil |
| UniProt:F6GTE9 | EMBL:FN594950 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | EntrezGene:LOC100262950 |
| wikigene:LOC100262950 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 |
| PANTHER:PTHR31992:SF71 | UniParc:UPI000210A8CC | ArrayExpress:VIT_17s0000g04850 | EnsemblPlantsGene:VIT_17s0000g04850 | EnsemblPlants:VIT_17s0000g04850.t01 | RefSeq:XP_002267092 |
| RefSeq:XP_002267092.1 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr17:+:5240463..5241938
Molecular Weight (calculated)
35210.1 Da
IEP (calculated)
8.480
GRAVY (calculated)
-0.572
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDIHSMGAG GGRIFGGDRR LRPHQNQALK CPRCESLNTK FCYYNNYNLS QPRHFCKSCR RYWTKGGVLR NVPVGGGCRK TKRSKAKSSS DAPRERKSNS
101: HSSSESSSLT ATTTAAATTA TTEAVSAPSS NAASTLVGFR ESRFFAPQSP NPNFEMPTLL DHSSDGNIFP EIGSFTSLMT GSNDPAALGF NISDISPFKY
201: QEQVDQNQQW QQQQQKMSDE LKMQEITAGF LDQTVQVELS ALQNRSNHGG FPSLDWQTSG DQGIFDLPGN VDQGYWTQSQ CVLFSPLLGF SFFLSNVFPI
301: KLIKYRKNIE CFVCLDAS
101: HSSSESSSLT ATTTAAATTA TTEAVSAPSS NAASTLVGFR ESRFFAPQSP NPNFEMPTLL DHSSDGNIFP EIGSFTSLMT GSNDPAALGF NISDISPFKY
201: QEQVDQNQQW QQQQQKMSDE LKMQEITAGF LDQTVQVELS ALQNRSNHGG FPSLDWQTSG DQGIFDLPGN VDQGYWTQSQ CVLFSPLLGF SFFLSNVFPI
301: KLIKYRKNIE CFVCLDAS
001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP
Arabidopsis Description
DOF5.4OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.