CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0726300-01	Rice	nucleus	69.74	75.18
Zm00001d051700_P001	Maize	mitochondrion	61.18	73.52
TraesCS6A01G287700.1	Wheat	nucleus	65.13	68.04
TraesCS6B01G317100.1	Wheat	nucleus	64.47	67.82
TraesCS6D01G268400.1	Wheat	nucleus	64.47	67.59
GSMUA_Achr5P23930_001	Banana	nucleus	21.38	33.33
CDX87189	Canola	nucleus	21.05	25.6
CDY40813	Canola	nucleus	22.7	24.38
Bra035956.1-P	Field mustard	nucleus	21.38	24.34
CDY16836	Canola	nucleus	21.38	24.34
Bra013003.1-P	Field mustard	nucleus	23.36	24.15
CDY02191	Canola	nucleus	23.36	24.15
CDY42836	Canola	nucleus	22.7	24.13
AT5G60850.1	Thale cress	nucleus	24.34	24.1
Bra029352.1-P	Field mustard	nucleus	22.04	24.1
KRH56758	Soybean	nucleus	23.03	23.97
KXG37485	Sorghum	nucleus	29.61	23.68
VIT_17s0000g04850.t01	Wine grape	nucleus	24.67	23.58
KRH54755	Soybean	nucleus	23.36	23.43
KRH03180	Soybean	nucleus	23.03	23.33
PGSC0003DMT400010397	Potato	nucleus	24.34	23.2
EES05649	Sorghum	nucleus	21.38	22.03
OQU79380	Sorghum	nucleus, vacuole	22.7	20.29
KRH63162	Soybean	nucleus	22.7	20.23
EES07840	Sorghum	nucleus	22.04	19.71
EER97271	Sorghum	nucleus	22.7	19.49
EES15496	Sorghum	nucleus	22.37	19.21
EES03938	Sorghum	nucleus	20.72	18.81
KXG26925	Sorghum	nucleus	23.68	18.56
KXG39680	Sorghum	nucleus	24.01	18.53
EER91281	Sorghum	nucleus	23.36	18.44
KXG21095	Sorghum	nucleus	22.04	17.4
KXG37254	Sorghum	nucleus	24.67	17.24
EES18302	Sorghum	plastid	20.72	17.21
KXG31020	Sorghum	nucleus	24.34	16.19

Protein Annotations

MapMan:15.5.1.5	UniProt:A0A194YSN9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EnsemblPlants:KXG30845
ProteinID:KXG30845	ProteinID:KXG30845.1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF40	EnsemblPlantsGene:SORBI_3004G254000	UniParc:UPI0007F1BEC9	InterPro:Znf_Dof	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:60026983..60027897

Molecular Weight (calculated)

30987.9 Da

IEP (calculated)

8.573

GRAVY (calculated)

-0.260

Length

304 amino acids

Sequence
(BLAST)

001: MQEFQSIPGL AGRLFGGAGA GDLRRAQAHA QQGPGARCGG VSPAAPPEVV KCPRCESTNT KFCYYNNYNL SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR
101: KTKRASSSSS ATSSVPSTPT SGSGDAAANK NPRRASASSP RSTNSGSASP TAAAATTPTP APTTPATPSS NSSVAVFTTS SHHHSSPFST IDVVAPPAPI
201: FADQAAALAS LFAPPPPPPL PVFTFAAQPK QEEAPTTTSE LQLVAGLSAA APSSSSVVSE DMAPFASLDA AGIFELGDAA SAAAYWNAGS CWTDVVQDPS
301: MYLP

Best Arabidopsis Sequence Match ( AT5G60850.1 )
(BLAST)

001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP

Arabidopsis Description

DOF5.4OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.