CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034163_P001	Maize	nucleus	86.84	91.41
Os03t0764900-01	Rice	nucleus	72.37	76.6
TraesCS5B01G406500.1	Wheat	nucleus	66.05	65.71
TraesCS5D01G412000.1	Wheat	nucleus	65.26	65.26
TraesCS5A01G401800.1	Wheat	nucleus	65.0	64.83
HORVU5Hr1G097620.1	Barley	nucleus	62.89	61.92
GSMUA_Achr10P...	Banana	nucleus	24.74	32.19
GSMUA_Achr8P02840_001	Banana	nucleus	25.0	30.94
KRH76935	Soybean	nucleus	27.11	30.65
Solyc02g090310.1.1	Tomato	nucleus	20.79	30.38
KXG30845	Sorghum	nucleus	23.68	29.61
CDY08775	Canola	nucleus	15.26	29.59
VIT_00s0253g00060.t01	Wine grape	nucleus	27.11	29.26
KRH28526	Soybean	nucleus	26.05	29.2
GSMUA_Achr9P09650_001	Banana	nucleus	23.16	29.14
PGSC0003DMT400025984	Potato	nucleus	21.32	28.93
KRH04709	Soybean	nucleus	26.58	28.69
GSMUA_Achr9P26560_001	Banana	nucleus	23.68	28.39
CDY70838	Canola	nucleus	18.68	23.2
CDY33948	Canola	nucleus	18.42	23.18
Bra031853.1-P	Field mustard	nucleus	18.42	23.03
Bra037822.1-P	Field mustard	nucleus	17.11	22.89
CDY37834	Canola	nucleus	18.16	22.7
CDY70312	Canola	nucleus	16.84	22.54
AT5G65590.1	Thale cress	nucleus	18.68	22.47
Bra024399.1-P	Field mustard	nucleus	17.37	21.57
CDX81292	Canola	nucleus	15.79	21.28
EES05649	Sorghum	nucleus	15.53	20.0
EES03938	Sorghum	nucleus	17.63	20.0
OQU79380	Sorghum	nucleus, vacuole	17.89	20.0
EES07840	Sorghum	nucleus	17.11	19.12
EES18302	Sorghum	plastid	17.89	18.58
EES15496	Sorghum	nucleus	17.11	18.36
KXG26925	Sorghum	nucleus	18.68	18.3
EER97271	Sorghum	nucleus	16.84	18.08
KXG37254	Sorghum	nucleus	20.0	17.47
EER91281	Sorghum	nucleus	17.63	17.4
KXG21095	Sorghum	nucleus	17.63	17.4
KXG31020	Sorghum	nucleus	20.0	16.63
KXG39680	Sorghum	nucleus	16.58	15.99

Protein Annotations

MapMan:15.5.1.5	UniProt:A0A1B6QHT9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EnsemblPlants:KXG37485
ProteinID:KXG37485	ProteinID:KXG37485.1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF70	EnsemblPlantsGene:SORBI_3001G078700	UniParc:UPI00081ACE24	InterPro:Znf_Dof	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:6036955..6038097

Molecular Weight (calculated)

38674.0 Da

IEP (calculated)

9.132

GRAVY (calculated)

-0.189

Length

380 amino acids

Sequence
(BLAST)

001: MIQELLGGAA MDQLKSVNDV NAASLPLLLH PVISNPSPTS SSSTSSRSSA QQQQRSTSAT SSPQGQGPQQ QGQGQGAEQT PLRCPRCNSS NTKFCYYNNY
101: NLTQPRHFCK TCRRYWTKGG ALRNVPIGGG CRKPRPMPTP VAKPVISSCK AVGGGVPSLG LGVGLGMGMG AGPGPWASSQ QAAAAQLMAL LNSARGVHQG
201: GGNMHRLLGL DAMAHLPLHV LPGAGNNNAG GTAPSLWPQS APRAIPTPPH MDSQLGMGPL GQHDVLSSLG LKLPPPSSSP AAASYYSDQL HAVVSSAAGR
301: GGHEYEAAAS GAMSLPCTTA LTSLPPAASS VSAALTSCAT VGLDLPPVSV PASEMQYWAA GPAAMSVAWP DLPTPNGAFP

Best Arabidopsis Sequence Match ( AT5G60850.1 )
(BLAST)

001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP

Arabidopsis Description

DOF5.4OBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178UF84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.