CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15496	Sorghum	nucleus	86.76	83.33
EES05649	Sorghum	nucleus	22.06	25.42
KXG26925	Sorghum	nucleus	25.88	22.68
KXG30845	Sorghum	nucleus	19.71	22.04
KXG31020	Sorghum	nucleus	27.65	20.57
EES03938	Sorghum	nucleus	20.0	20.3
OQU79380	Sorghum	nucleus, vacuole	19.71	19.71
EER97271	Sorghum	nucleus	19.71	18.93
KXG39680	Sorghum	nucleus	21.47	18.53
EES18302	Sorghum	plastid	19.71	18.31
KXG37254	Sorghum	nucleus	22.65	17.7
EER91281	Sorghum	nucleus	19.41	17.14
KXG37485	Sorghum	nucleus	19.12	17.11
KXG21095	Sorghum	nucleus	18.53	16.36

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8066529	UniProt:C5Y2M8	EnsemblPlants:EES07840	ProteinID:EES07840	ProteinID:EES07840.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF74	EnsemblPlantsGene:SORBI_3005G001500	UniParc:UPI0001A862E2	RefSeq:XP_002448852.1
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:119063..122213

Molecular Weight (calculated)

36182.3 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.637

Length

340 amino acids

Sequence
(BLAST)

001: MDMSSSSTAA ASSPQNHQQE AIVSSPIIKE EARSPKQAQV TQQASGSGER KPRPQLAEAL RCPRCNSNNT KFCYYNNYST SQPRYFCKGC RRYWTHGGAL
101: RNVPVGGGCR KNKRTSGSIS ASGTSSSSSA AYAPLSPSTN TSSSKMSINT QLMMVPNMMM STSSMTGLFP NVLPTLMSAT EGGEFNFTMD NQHASLPFTP
201: MSLSNQASVP VLAAGESGTM PSFLEMLRKG LLHGSSSYDT GLAMSDGNNG MDMSFPLPAY GAMHGHGLSG STTNDARQLV GTQQGVNTGG GFVGSTGVQE
301: EEEEGDNKAM VKSNKNNNGG SLLDRYWIKP NNNNNKRQQG

Best Arabidopsis Sequence Match ( AT4G24060.1 )
(BLAST)

001: MDTAQWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPSVG GERKARPEKD QAVNCPRCNS TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG
101: GSRKNKRSHS SSSDISNNHS DSTQPATKKH LSDHHHHLMS MSQQGLTGQN PKFLETTQQD LNLGFSPHGM IRTNFTDLIH NIGNNTNKSN NNNNPLIVSS
201: CSAMATSSLD LIRNNSNNGN SSNSSFMGFP VHNQDPASGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEEGG EGGDDVNGRH LFPFEDLKLP
301: VSSSSATINV DINEHQKRGS GSDAAATSGG YWTGMLSGGS WC

Arabidopsis Description

DOF4.6Dof zinc finger protein DOF4.6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.