Factsheet for VIT_00s0218g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08775	Canola	nucleus	17.75	30.61
VIT_10s0003g00040.t01	Wine grape	nucleus	26.63	29.22
AT5G65590.1	Thale cress	nucleus	23.37	25.0
CDY33948	Canola	nucleus	22.19	24.83
VIT_06s0004g04520.t01	Wine grape	nucleus	23.37	24.69
Bra037822.1-P	Field mustard	nucleus	20.71	24.65
CDY70312	Canola	nucleus	20.71	24.65
CDY70838	Canola	nucleus	22.19	24.51
PGSC0003DMT400041580	Potato	nucleus	27.22	24.34
Solyc11g010940.1.1	Tomato	nucleus	26.92	24.27
CDX81292	Canola	nucleus	20.12	24.11
Bra024399.1-P	Field mustard	nucleus	21.6	23.86
VIT_16s0098g01420.t01	Wine grape	nucleus	20.12	23.69
Bra031853.1-P	Field mustard	nucleus	21.3	23.68
VIT_13s0019g01410.t01	Wine grape	nucleus	23.37	23.44
CDY37834	Canola	nucleus	21.01	23.36
VIT_06s0004g03420.t01	Wine grape	nucleus	19.82	22.64
VIT_08s0007g00180.t01	Wine grape	nucleus	23.08	22.61
VIT_08s0105g00170.t01	Wine grape	nucleus	18.05	22.59
VIT_02s0025g02250.t01	Wine grape	nucleus	18.64	21.88
VIT_17s0000g08290.t01	Wine grape	nucleus	19.82	21.75
VIT_00s0253g00060.t01	Wine grape	nucleus	22.19	21.31
VIT_18s0001g15730.t01	Wine grape	nucleus	17.46	21.0
VIT_15s0046g00150.t01	Wine grape	nucleus	19.53	20.89
KRH45516	Soybean	nucleus	24.56	20.6
VIT_17s0000g04850.t01	Wine grape	nucleus	19.23	20.44
KRG99513	Soybean	nucleus	22.19	20.33
VIT_10s0003g00030.t01	Wine grape	nucleus	17.46	19.73
VIT_00s0652g00010.t01	Wine grape	nucleus	16.86	19.32

Protein Annotations

EntrezGene:100260986	wikigene:100260986	MapMan:15.5.1.5	EMBL:AM466868	ProteinID:CAN63716	ProteinID:CAN63716.1
ProteinID:CCB62739	ProteinID:CCB62739.1	UniProt:F6I721	EMBL:FN596763	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	EntrezGene:LOC100260986	wikigene:LOC100260986	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF62	UniParc:UPI000210A546	ArrayExpress:VIT_00s0218g00040	EnsemblPlantsGene:VIT_00s0218g00040
EnsemblPlants:VIT_00s0218g00040.t01	RefSeq:XP_002266518	RefSeq:XP_002266518.2	InterPro:Znf_Dof	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:13957686..13958702

Molecular Weight (calculated)

36416.3 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.616

Length

338 amino acids

Sequence
(BLAST)

001: MSPDDIPANP VSKDETQGSG GRKTGAHRPP DQVLKCPRCD SPNTKFCYYN NYSLTQPRHF CKTCRRYWTK GGALRNVPIG GGCRKNKKIK SSSRLSGDSK
101: DVGASSEMGG LKFFHGLSPA MDFQLGGLPF PRLHSSTPPV YNQFSSFGDI SATSAASAAV STPCFSIDQP GSSSSLMGFN YPLPSVLKQG ESGGFGGAIQ
201: DMGSMNVHSS LASSIESLSS INQDLHWKLQ QQRLAMLFGG ENQKDSSVSS VPPENQNQKL QPILFQNLEI SKPEVCAVGN SRKDSASGNP ATEWFFDTYT
301: PVTPTTTNTS TGGNGNDNTN HWNGIQAWSD LHQYSTLP

Best Arabidopsis Sequence Match ( AT5G65590.1 )
(BLAST)

001: MSSHTNLPSP KPVPKPDHRI SGTSQTKKPP SSSVAQDQQN LKCPRCNSPN TKFCYYNNYS LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPN
101: SSMNTLPSSS SSQRFFSSIM EDSSKFFPPP TTMDFQLAGL SLNKMNDLQL LNNQEVLDLR PMMSSGRENT PVDVGSGLSL MGFGDFNNNH SPTGFTTAGA
201: SDGNLASSIE TLSCLNQDLH WRLQQQRMAM LFGNSKEETV VVERPQPILY RNLEIVNSSS PSSPTKKGDN QTEWYFGNNS DNEGVISNNA NTGGGGSEWN
301: NGIQAWTDLN HYNALP

Arabidopsis Description

DOF5.7SCAP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.