Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g010940.1.1 | Tomato | nucleus | 94.18 | 94.93 |
| KRH74458 | Soybean | nucleus | 53.44 | 59.94 |
| KRH39485 | Soybean | nucleus | 53.44 | 59.06 |
| Bra037822.1-P | Field mustard | nucleus | 31.48 | 41.9 |
| CDY70312 | Canola | nucleus | 31.48 | 41.9 |
| AT5G65590.1 | Thale cress | nucleus | 34.66 | 41.46 |
| CDY70838 | Canola | nucleus | 33.33 | 41.18 |
| CDY33948 | Canola | nucleus | 32.8 | 41.06 |
| Bra024399.1-P | Field mustard | nucleus | 32.54 | 40.2 |
| Bra031853.1-P | Field mustard | nucleus | 32.28 | 40.13 |
| CDY37834 | Canola | nucleus | 32.01 | 39.8 |
| KRG99513 | Soybean | nucleus | 37.57 | 38.48 |
| KRH45516 | Soybean | nucleus | 41.01 | 38.46 |
| CDX81292 | Canola | nucleus | 28.57 | 38.3 |
| CDY08775 | Canola | nucleus | 18.78 | 36.22 |
| PGSC0003DMT400060216 | Potato | nucleus | 21.96 | 27.48 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 24.34 | 27.22 |
| PGSC0003DMT400047705 | Potato | nucleus | 18.52 | 26.82 |
| PGSC0003DMT400019416 | Potato | nucleus | 21.16 | 26.49 |
| PGSC0003DMT400058729 | Potato | nucleus | 13.49 | 25.89 |
| PGSC0003DMT400001174 | Potato | nucleus | 17.2 | 25.39 |
| PGSC0003DMT400033382 | Potato | nucleus | 17.2 | 25.19 |
| PGSC0003DMT400000349 | Potato | nucleus | 17.46 | 24.91 |
| PGSC0003DMT400048612 | Potato | nucleus | 17.72 | 24.72 |
| PGSC0003DMT400078164 | Potato | nucleus | 20.9 | 24.69 |
| PGSC0003DMT400025984 | Potato | nucleus | 17.72 | 23.93 |
| PGSC0003DMT400065271 | Potato | nucleus | 17.99 | 22.74 |
| PGSC0003DMT400069680 | Potato | nucleus | 16.67 | 22.5 |
| PGSC0003DMT400031928 | Potato | nucleus | 19.31 | 21.99 |
| PGSC0003DMT400002060 | Potato | nucleus | 15.34 | 21.8 |
| PGSC0003DMT400049288 | Potato | nucleus | 21.16 | 21.39 |
| PGSC0003DMT400010397 | Potato | nucleus | 17.99 | 21.32 |
| PGSC0003DMT400055052 | Potato | nucleus | 17.46 | 21.09 |
| PGSC0003DMT400023033 | Potato | nucleus | 22.22 | 20.84 |
| PGSC0003DMT400076397 | Potato | nucleus | 15.61 | 20.7 |
| PGSC0003DMT400057782 | Potato | mitochondrion | 15.08 | 20.21 |
| PGSC0003DMT400076447 | Potato | nucleus | 20.63 | 19.6 |
| PGSC0003DMT400046598 | Potato | nucleus | 16.67 | 19.09 |
| PGSC0003DMT400075051 | Potato | nucleus | 14.55 | 18.9 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:M1BBK0 | PFAM:PD007478 |
| PFAM:PF02701 | EnsemblPlantsGene:PGSC0003DMG400016116 | PGSC:PGSC0003DMG400016116 | EnsemblPlants:PGSC0003DMT400041580 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF62 | UniParc:UPI00029565DE | InterPro:Znf_Dof | SEG:seg | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016116]
Coordinates
chr11:+:2052699..2055040
Molecular Weight (calculated)
41173.9 Da
IEP (calculated)
6.981
GRAVY (calculated)
-0.895
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQDNKDESQ SSGGGDGSGG GPMGARPKEQ ALNCPRCDSP NTKFCYYNNY SLSQPRHFCK TCRRYWTKGG ALRNVPIGGG CRKNKKIKTS SSSSRFSGDS
101: KDTISGSSDI GGLKFFHGLS PAMDFQLGGL NFPRLSNNTS TSTVGGSIFN QFTSFGENST PNIGSTSCFS LDPSGSSLLG FNNNFPFSSS MLKQGTDGVQ
201: EMGSMGVHHG TMASSIESLS SINQDLHWKL QQQRLSMLFG GENQKENIVS SSIPLHDDQN QNQNQNQIQI QKPQPILFQN LEISSSKQQE DHQETFGNNN
301: VDSRKDCSTT MGSHHGNNLS TEWFFDNSFG VNPNSTNSNN NNNNNGNGNA NANDDQNVNN WNSTIQAWSN LNQYSTLP
101: KDTISGSSDI GGLKFFHGLS PAMDFQLGGL NFPRLSNNTS TSTVGGSIFN QFTSFGENST PNIGSTSCFS LDPSGSSLLG FNNNFPFSSS MLKQGTDGVQ
201: EMGSMGVHHG TMASSIESLS SINQDLHWKL QQQRLSMLFG GENQKENIVS SSIPLHDDQN QNQNQNQIQI QKPQPILFQN LEISSSKQQE DHQETFGNNN
301: VDSRKDCSTT MGSHHGNNLS TEWFFDNSFG VNPNSTNSNN NNNNNGNGNA NANDDQNVNN WNSTIQAWSN LNQYSTLP
001: MSSHTNLPSP KPVPKPDHRI SGTSQTKKPP SSSVAQDQQN LKCPRCNSPN TKFCYYNNYS LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPN
101: SSMNTLPSSS SSQRFFSSIM EDSSKFFPPP TTMDFQLAGL SLNKMNDLQL LNNQEVLDLR PMMSSGRENT PVDVGSGLSL MGFGDFNNNH SPTGFTTAGA
201: SDGNLASSIE TLSCLNQDLH WRLQQQRMAM LFGNSKEETV VVERPQPILY RNLEIVNSSS PSSPTKKGDN QTEWYFGNNS DNEGVISNNA NTGGGGSEWN
301: NGIQAWTDLN HYNALP
101: SSMNTLPSSS SSQRFFSSIM EDSSKFFPPP TTMDFQLAGL SLNKMNDLQL LNNQEVLDLR PMMSSGRENT PVDVGSGLSL MGFGDFNNNH SPTGFTTAGA
201: SDGNLASSIE TLSCLNQDLH WRLQQQRMAM LFGNSKEETV VVERPQPILY RNLEIVNSSS PSSPTKKGDN QTEWYFGNNS DNEGVISNNA NTGGGGSEWN
301: NGIQAWTDLN HYNALP
Arabidopsis Description
DOF5.7SCAP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.