Factsheet for PGSC0003DMT400049288

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086440.1.1	Tomato	nucleus	91.44	94.48
VIT_08s0007g00180.t01	Wine grape	nucleus	50.0	54.2
CDY07781	Canola	nucleus	29.68	51.87
PGSC0003DMT400023033	Potato	nucleus	48.13	44.66
GSMUA_Achr6P33410_001	Banana	nucleus	28.34	42.91
Bra000008.1-P	Field mustard	nucleus	33.16	42.32
PGSC0003DMT400078164	Potato	nucleus	35.56	41.56
CDX93365	Canola	nucleus	34.22	41.42
CDY65260	Canola	nucleus	34.22	41.42
CDX79743	Canola	nucleus	32.35	41.3
CDX74947	Canola	nucleus	35.83	41.23
Bra017171.1-P	Field mustard	nucleus	33.96	41.1
Zm00001d034653_P001	Maize	nucleus	24.6	41.07
Bra005181.1-P	Field mustard	nucleus	35.56	40.92
CDX91370	Canola	nucleus	35.56	40.92
AT2G37590.1	Thale cress	nucleus	35.83	40.61
PGSC0003DMT400060216	Potato	nucleus	32.62	40.4
Os03t0821200-00	Rice	nucleus	41.44	37.44
Zm00001d034651_P002	Maize	nucleus	41.18	37.29
KXG37254	Sorghum	nucleus	43.05	37.01
TraesCS5B01G492600.1	Wheat	nucleus	39.57	32.74
TraesCS5A01G479400.1	Wheat	nucleus	40.37	32.33
TraesCS5D01G493000.1	Wheat	nucleus	39.04	32.09
HORVU5Hr1G113220.6	Barley	nucleus	38.5	32.0
HORVU5Hr1G113190.2	Barley	nucleus, plastid	23.8	31.12
PGSC0003DMT400001174	Potato	nucleus	18.98	27.73
PGSC0003DMT400047705	Potato	nucleus	18.98	27.2
PGSC0003DMT400069680	Potato	nucleus	19.79	26.43
PGSC0003DMT400033382	Potato	nucleus	17.65	25.58
PGSC0003DMT400019416	Potato	nucleus	20.59	25.5
PGSC0003DMT400058729	Potato	nucleus	13.1	24.87
Zm00001d012963_P001	Maize	plastid, vacuole	41.18	24.52
PGSC0003DMT400010397	Potato	nucleus	20.59	24.14
PGSC0003DMT400002060	Potato	nucleus	16.84	23.68
PGSC0003DMT400065271	Potato	nucleus	18.72	23.41
PGSC0003DMT400025984	Potato	nucleus	17.38	23.21
PGSC0003DMT400046598	Potato	nucleus	20.32	23.03
PGSC0003DMT400076397	Potato	nucleus	17.38	22.81
PGSC0003DMT400048612	Potato	nucleus	16.31	22.51
PGSC0003DMT400075051	Potato	nucleus	17.11	21.99
PGSC0003DMT400057782	Potato	mitochondrion	16.58	21.99
PGSC0003DMT400000349	Potato	nucleus	15.51	21.89
PGSC0003DMT400031928	Potato	nucleus	18.98	21.39
PGSC0003DMT400041580	Potato	nucleus	21.39	21.16
PGSC0003DMT400055052	Potato	nucleus	16.58	19.81
PGSC0003DMT400076447	Potato	nucleus	19.79	18.59
HORVU2Hr1G095390.1	Barley	cytosol, mitochondrion, nucleus	5.61	9.5

Protein Annotations

EntrezGene:102602609	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212
InterPro:IPR003851	UniProt:M1BNI6	PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400019155	PGSC:PGSC0003DMG400019155
EnsemblPlants:PGSC0003DMT400049288	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF66	UniParc:UPI000294F220
RefSeq:XP_006349511.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019155]

Coordinates

chr10:+:51317415..51319133

Molecular Weight (calculated)

40144.8 Da

IEP (calculated)

9.392

GRAVY (calculated)

-0.588

Length

374 amino acids

Sequence
(BLAST)

001: MVFSSISAYL DPSNWQQQVG YSIPNPQLLS GLSQPTPPPP LASTTPPPPP PPPPHQPHHV GGGGGSIRPG SMADRARLAN IPMSEATQKC PRCESTNTKF
101: CYFNNYSLSQ PRHFCKTCRR YWTRGGALRS VPVGGGCRRN KRSSTSSSST TTITSAKSSN NNNTSKSQAT NSGSTSNNNS TFSSPSSAAS LLGLMNPPIH
201: PLRFMSPLGQ LTDQHFTPNE MNYTSISSSS PAPIVMGTNE NMNFQLGMGS NLEQWRLHQQ LVNQFPYNIY GGLDSSLASG SGSASGSGLY PFHQAHYTCN
301: DAGGGGVISQ IRPKVSNPML TQLALMKMED HQDHVASMPR QFLGNENWLS NGGNVNWNEL SASFSSSSTS NNVL

Best Arabidopsis Sequence Match ( AT2G37590.1 )
(BLAST)

001: MVFSSIQAYL DSSNWQQAPP SNYNHDGTGA SANGGHVLRP QLQPQQQPQQ QPHPNGSGGG GGGGGGSIRA GSMVDRARQA NVALPEAALK CPRCESTNTK
101: FCYFNNYSLT QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NRRTKSNSNN NNNSTATSNN TSFSSGNAST ISTILSSHYG GNQESILSQI LSPARLMNPT
201: YNHLGDLTSN TKTDNNMSLL NYGGLSQDLR SIHMGASGGS LMSCVDEWRS ASYHQQSSMG GGNLEDSSNP NPSANGFYSF ESPRITSASI SSALASQFSS
301: VKVEDNPYKW VNVNGNCSSW NDLSAFGSSR

Arabidopsis Description

DOF2.4Dof zinc finger protein DOF2.4 [Source:UniProtKB/Swiss-Prot;Acc:O80928]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.