Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g02800.t01 | |
| VIT_10s0003g04670.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45610.1 | VIT_06s0004g02800.t01 | AT5G60690.1 | 21245844 |
| AT5G60200.1 | VIT_10s0003g04670.t01 | AT2G34710.1 | 21245844 |
| AT5G60200.1 | VIT_06s0004g02800.t01 | AT5G60690.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21495 | Soybean | nucleus | 49.15 | 52.16 |
| KRH10827 | Soybean | nucleus | 49.15 | 50.88 |
| KRH50000 | Soybean | nucleus | 53.56 | 47.59 |
| KRH20497 | Soybean | nucleus | 51.86 | 45.54 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 26.44 | 35.94 |
| Solyc02g078620.1.1 | Tomato | nucleus | 34.24 | 35.56 |
| PGSC0003DMT400057782 | Potato | mitochondrion | 32.88 | 34.4 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 35.59 | 29.58 |
| VIT_06s0004g04520.t01 | Wine grape | nucleus | 28.14 | 25.94 |
| VIT_13s0019g01410.t01 | Wine grape | nucleus | 29.49 | 25.82 |
| Bra020261.1-P | Field mustard | nucleus | 19.66 | 24.37 |
| VIT_06s0004g03420.t01 | Wine grape | nucleus | 24.41 | 24.32 |
| VIT_08s0007g00180.t01 | Wine grape | nucleus | 27.8 | 23.77 |
| VIT_16s0098g01420.t01 | Wine grape | nucleus | 23.05 | 23.69 |
| CDY09221 | Canola | nucleus | 20.68 | 23.64 |
| VIT_02s0025g02250.t01 | Wine grape | nucleus | 23.05 | 23.61 |
| CDX71050 | Canola | nucleus | 19.66 | 22.92 |
| AT3G45610.1 | Thale cress | nucleus | 18.98 | 22.86 |
| CDX80191 | Canola | nucleus | 19.66 | 22.57 |
| CDY31568 | Canola | nucleus | 19.66 | 22.48 |
| AT5G60200.1 | Thale cress | nucleus | 19.32 | 22.18 |
| Bra002504.1-P | Field mustard | nucleus | 19.32 | 22.09 |
| VIT_10s0003g00040.t01 | Wine grape | nucleus | 23.05 | 22.08 |
| VIT_10s0003g00030.t01 | Wine grape | nucleus | 22.37 | 22.07 |
| CDX88742 | Canola | nucleus | 20.0 | 21.3 |
| VIT_08s0105g00170.t01 | Wine grape | nucleus | 19.32 | 21.11 |
| Bra006675.1-P | Field mustard | nucleus | 19.66 | 20.94 |
| VIT_17s0000g04850.t01 | Wine grape | nucleus | 22.37 | 20.75 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 21.36 | 20.45 |
| VIT_15s0046g00150.t01 | Wine grape | nucleus | 21.36 | 19.94 |
| VIT_00s0253g00060.t01 | Wine grape | nucleus | 21.69 | 18.18 |
| VIT_18s0001g15730.t01 | Wine grape | nucleus | 16.61 | 17.44 |
| VIT_00s0218g00040.t01 | Wine grape | nucleus | 19.32 | 16.86 |
| Zm00001d029512_P001 | Maize | nucleus | 20.0 | 16.81 |
| Os07t0508900-00 | Rice | cytosol | 2.03 | 15.0 |
| CDY08776 | Canola | nucleus | 2.37 | 8.14 |
| HORVU2Hr1G047750.4 | Barley | plastid | 5.42 | 7.08 |
| TraesCS6A01G233700.1 | Wheat | cytosol, mitochondrion, nucleus | 3.73 | 5.07 |
| TraesCS1B01G185700.1 | Wheat | cytosol | 3.73 | 5.07 |
| Os07t0508700-00 | Rice | cytosol | 1.69 | 4.81 |
Protein Annotations
| EntrezGene:100246521 | wikigene:100246521 | MapMan:15.5.1.5 | ProteinID:CCB53551 | ProteinID:CCB53551.1 | UniProt:F6HJS1 |
| EMBL:FN595806 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | EntrezGene:LOC100246521 | wikigene:LOC100246521 |
| PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF81 |
| UniParc:UPI0002109641 | ArrayExpress:VIT_00s0652g00010 | EnsemblPlantsGene:VIT_00s0652g00010 | EnsemblPlants:VIT_00s0652g00010.t01 | unigene:Vvi.15605 | RefSeq:XP_002268276 |
| RefSeq:XP_002268276.2 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:+:33581346..33582988
Molecular Weight (calculated)
32428.9 Da
IEP (calculated)
9.236
GRAVY (calculated)
-0.689
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLSSKQVSG DGIDWGQTLL QGGSLELHKP PMMRRQQQQQ QQQQLEPLKC PRCDSTNTKF CYFNNYNKSQ PRHFCKSCKR HWTKGGTLRN VPVGGGRKNK
101: RPKTSATATA AAATPTVTSS PATPTTSSIT NRSNINMGIQ TQQQRKSSLA LGDHEKSSLS DILYQAFIRP PLSVMQQNSI GSSNGMSMAS IPSLPPNQNL
201: HFPFRSLSSF DTSPSSIPSS FQPSNVYNYT GEAEAKDGST TACFMPSTSG TITQPWQMPA ASSVVDTTNY WSWDDIDTFV STDLNIPWDD SEMKP
101: RPKTSATATA AAATPTVTSS PATPTTSSIT NRSNINMGIQ TQQQRKSSLA LGDHEKSSLS DILYQAFIRP PLSVMQQNSI GSSNGMSMAS IPSLPPNQNL
201: HFPFRSLSSF DTSPSSIPSS FQPSNVYNYT GEAEAKDGST TACFMPSTSG TITQPWQMPA ASSVVDTTNY WSWDDIDTFV STDLNIPWDD SEMKP
001: MQDLTSAAAY YHQSMMMTTA KQNQPELPEQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC KNCRRYWTKG GALRNIPVGG GTRKSNKRSG SSPSSNLKNQ
101: TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN
101: TVAEKPDHHG SGSEEKEERV SGQEMNPTRM LYGLPVGDPN GASFSSLLAS NMQMGGLVYE SGSRWLPGMD LGLGSVRRSD DTWTDLAMNR MEKN
Arabidopsis Description
DOF1.7Dof zinc finger protein DOF1.7 [Source:UniProtKB/Swiss-Prot;Acc:O82155]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.