Factsheet for VIT_13s0019g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04520.t01	Wine grape	nucleus	57.27	60.31
VIT_08s0007g00180.t01	Wine grape	nucleus	59.64	58.26
GSMUA_Achr6P33410_001	Banana	nucleus	35.31	48.18
CDX73385	Canola	nucleus	41.54	46.36
CDY69145	Canola	nucleus, plastid	40.06	42.86
Bra014752.1-P	Field mustard	nucleus	43.92	42.29
Bra007156.1-P	Field mustard	nucleus	40.36	41.59
AT3G55370.3	Thale cress	nucleus	44.21	40.49
CDY40213	Canola	nucleus	41.84	39.72
CDX76102	Canola	nucleus	43.62	38.58
VIT_02s0025g02250.t01	Wine grape	nucleus	28.49	33.33
VIT_16s0098g01420.t01	Wine grape	nucleus	27.3	32.06
VIT_06s0004g03420.t01	Wine grape	nucleus	27.0	30.74
VIT_00s0652g00010.t01	Wine grape	nucleus	25.82	29.49
VIT_10s0003g00040.t01	Wine grape	nucleus	26.71	29.22
VIT_10s0003g00030.t01	Wine grape	nucleus	23.44	26.42
VIT_15s0046g00150.t01	Wine grape	nucleus	24.04	25.63
VIT_17s0000g04850.t01	Wine grape	nucleus	24.04	25.47
VIT_17s0000g08290.t01	Wine grape	nucleus	22.55	24.68
VIT_18s0001g15730.t01	Wine grape	nucleus	20.47	24.56
VIT_08s0105g00170.t01	Wine grape	nucleus	18.99	23.7
VIT_00s0218g00040.t01	Wine grape	nucleus	23.44	23.37
VIT_00s0253g00060.t01	Wine grape	nucleus	22.55	21.59

Protein Annotations

EntrezGene:100258172	wikigene:100258172	MapMan:15.5.1.5	EMBL:AM476724	ProteinID:CAN79495	ProteinID:CAN79495.1
ProteinID:CBI31672	ProteinID:CBI31672.3	UniProt:D7TLT5	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	EntrezGene:LOC100258172	wikigene:LOC100258172	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF61	UniParc:UPI0001BE3E21	ArrayExpress:VIT_13s0019g01410	EnsemblPlantsGene:VIT_13s0019g01410
EnsemblPlants:VIT_13s0019g01410.t01	RefSeq:XP_002278642	RefSeq:XP_002278642.1	RefSeq:XP_010658563.1	InterPro:Znf_Dof	SEG:seg

Description

No Description!

Coordinates

chr13:-:3000612..3002046

Molecular Weight (calculated)

35458.6 Da

IEP (calculated)

9.085

GRAVY (calculated)

-0.574

Length

337 amino acids

Sequence
(BLAST)

001: MVFSSVPVYL DPPNWQQQAN HQPGGSNDNP HLPPQQAPPP LPPVGGGGSG GTGTIRPGSM ADRARLAKLP QPETALKCPR CESTNTKFCY FNNYSLSQPR
101: HFCKACRRYW TRGGALRNVP VGGGCRRNKR SKGNRSKSPV TGERQGGSSS ASAVPSNSCT SDMIGHLPPP PPPPQLSFLP PLHHLADYGA GDIGLNFGGI
201: QPPVAVSGGG NSGTDIEFPI GSCSGGGGPI LSGGLAEHWR LQQVQQFPFL AGLEPPSGLY SFEGEGTEPP SYLGGSGHLR AKALDSGVTQ MTAVKIEENQ
301: GLNLSRNFLG LPGNDQYWSG NTWNDLSGSV KAKSAQR

Best Arabidopsis Sequence Match ( AT3G55370.2 )
(BLAST)

001: MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
101: HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
201: TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL LEGKGGVNQG DSQQKSSDYS NQLMFKPLMD FSSGGVSATQ TRNVKAEEND
301: QDRGRDGDGV NNLSRNFLGN ININSGRNEE YTSWGGNSSW TGFTSNNSTG HLSF

Arabidopsis Description

OBP3OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.