Factsheet for Bra030089.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15678	Canola	nucleus	99.66	90.83
CDY66590	Canola	nucleus	96.31	87.77
Bra032891.1-P	Field mustard	nucleus	83.22	83.5
Bra010884.1-P	Field mustard	nucleus	80.54	81.36
AT1G28310.2	Thale cress	nucleus	88.25	78.51
Bra009587.1-P	Field mustard	nucleus	16.11	27.12
VIT_10s0003g00040.t01	Wine grape	nucleus	25.84	25.0
Bra020261.1-P	Field mustard	nucleus	19.8	24.79
KRH10907	Soybean	nucleus	28.52	24.08
Bra037822.1-P	Field mustard	nucleus	22.48	23.59
Bra031853.1-P	Field mustard	nucleus	23.49	23.03
Bra002504.1-P	Field mustard	nucleus	19.8	22.87
Bra000008.1-P	Field mustard	nucleus	22.48	22.87
Bra035956.1-P	Field mustard	nucleus	20.47	22.85
KRH21402	Soybean	nucleus	27.18	22.69
Bra024399.1-P	Field mustard	nucleus	23.15	22.55
Bra014752.1-P	Field mustard	nucleus	26.17	22.29
Bra007156.1-P	Field mustard	nucleus	24.16	22.02
Bra029352.1-P	Field mustard	nucleus	20.47	21.94
Bra030696.1-P	Field mustard	nucleus	24.5	21.86
Bra013003.1-P	Field mustard	nucleus	21.48	21.77
Bra014418.1-P	Field mustard	nucleus	22.15	21.29
Bra037401.1-P	Field mustard	nucleus	20.81	20.81
Bra005181.1-P	Field mustard	nucleus	22.48	20.62
Bra004525.1-P	Field mustard	nucleus	24.16	20.45
Bra017171.1-P	Field mustard	nucleus	21.14	20.39
Bra012804.1-P	Field mustard	nucleus	16.44	20.33
Bra035696.1-P	Field mustard	nucleus	17.45	20.31
GSMUA_Achr10P...	Banana	nucleus	23.49	20.11
EER97271	Sorghum	nucleus	23.83	20.06
Bra012277.1-P	Field mustard	nucleus	17.45	19.92
Bra006675.1-P	Field mustard	nucleus	18.46	19.86
Bra035667.1-P	Field mustard	nucleus	22.82	19.77
Bra017906.1-P	Field mustard	nucleus	16.78	19.76
Bra027722.1-P	Field mustard	nucleus	21.48	19.75
PGSC0003DMT400076447	Potato	nucleus	26.17	19.6
Zm00001d021591_P001	Maize	nucleus	23.49	19.44
Bra039272.1-P	Field mustard	nucleus, plastid	23.49	19.44
TraesCS2B01G249200.1	Wheat	nucleus, plastid	23.15	19.44
Bra006923.1-P	Field mustard	nucleus	15.77	19.42
TraesCS2A01G225900.1	Wheat	nucleus, plastid	23.15	19.38
TraesCS2D01G231600.1	Wheat	nucleus	23.15	19.38
Solyc02g077950.1.1	Tomato	nucleus	24.5	19.26
Bra000429.1-P	Field mustard	nucleus	23.83	19.24
Bra031588.1-P	Field mustard	nucleus	20.13	18.93
Zm00001d006463_P001	Maize	plastid	21.48	18.23
Bra005725.1-P	Field mustard	nucleus	23.15	17.12
Bra013758.1-P	Field mustard	nucleus	19.13	16.96
Bra028872.1-P	Field mustard	nucleus	22.82	16.75
Bra019247.1-P	Field mustard	nucleus	19.13	16.62
Bra035873.1-P	Field mustard	nucleus	18.46	16.18
Bra010136.1-P	Field mustard	nucleus	19.8	16.03
Bra010548.1-P	Field mustard	nucleus	18.46	15.62
Bra009588.1-P	Field mustard	plastid	6.04	10.11

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra030089	EnsemblPlants:Bra030089.1	EnsemblPlants:Bra030089.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4EMR9	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF79	UniParc:UPI0002541120	InterPro:Znf_Dof	SEG:seg	:

Description

AT1G28310 (E=3e-100) | Dof-type zinc finger domain-containing protein

Coordinates

chrA07:+:6662930..6663826

Molecular Weight (calculated)

32187.6 Da

IEP (calculated)

9.951

GRAVY (calculated)

-0.588

Length

298 amino acids

Sequence
(BLAST)

001: MQSKNMIVAP SHQQQQQQQP QLKCPRCDSS NTKFCYYNNY SLSQPRHFCK ACKRYWTRGG TLRNVPVGGS YRKNKRVKRP ATAASTVSKT TSSSPNHQIS
101: HFSSMNHHPM LYGLSDHVSS CNSLPMIPSR FNDSSKTSSS GLESEFFSSG FSGLGALGLG FPHHMSHDHT AINGGFINNS TANKPFLLSG LFGSSVSSSS
201: SSHLQHPHKP MNNGGEMMGQ SHLQTLASLQ DLHVGGNNED VNKLGKLGQI SGTISGFMSP SSLDPSNSNN IWNNASVVNG GWLDPTNNNV GSSLTSLI

Best Arabidopsis Sequence Match ( AT1G28310.1 )
(BLAST)

001: MQSKNMIVAS SHQQQQQQQP QQPQPQLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGSYRKNK RVKRPSTATT TTASTVSTTN
101: SSSPNNPHQI SHFSSMNHHP LFYGLSDHMS SCNNNLPMIP SRFSDSSKTC SSSGLESEFL SSGFSSLSAL GLGLPHQMSH DHTINGSFIN NSTTNKPFLL
201: SGLFGSSMSS SSTLLQHPHK PMNNGGDMLG QSHLQTLASL QDLHVGGNNE DMKYKEGKLD QISGNINGFM SSSSSLDPSN YNNMWNNASV VNGAWLDPTN
301: NNVGSSLTSL I

Arabidopsis Description

Dof-type zinc finger DNA-binding family protein [Source:TAIR;Acc:AT1G28310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.