Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 67.27 | 71.71 |
| VIT_17s0000g08290.t01 | Wine grape | nucleus | 45.45 | 40.58 |
| Solyc06g071480.2.1 | Tomato | nucleus | 37.82 | 37.28 |
| PGSC0003DMT400069680 | Potato | nucleus | 37.45 | 36.79 |
| KRH63537 | Soybean | nucleus | 45.45 | 36.34 |
| KRH54395 | Soybean | nucleus | 45.82 | 35.69 |
| GSMUA_Achr4P30470_001 | Banana | nucleus | 20.73 | 35.4 |
| KRH03289 | Soybean | nucleus | 40.0 | 33.33 |
| KRH57071 | Soybean | nucleus | 40.0 | 33.33 |
| PGSC0003DMT400046598 | Potato | nucleus | 39.27 | 32.73 |
| Solyc03g112930.2.1 | Tomato | nucleus | 39.27 | 32.43 |
| GSMUA_Achr7P15150_001 | Banana | nucleus | 20.0 | 30.39 |
| CDY16754 | Canola | nucleus | 37.09 | 30.0 |
| Bra035873.1-P | Field mustard | nucleus | 37.09 | 30.0 |
| CDX87270 | Canola | nucleus | 37.09 | 29.91 |
| GSMUA_Achr5P19980_001 | Banana | nucleus | 27.27 | 28.2 |
| GSMUA_Achr3P18260_001 | Banana | nucleus | 22.91 | 28.12 |
| CDY00341 | Canola | nucleus | 37.45 | 27.99 |
| AT5G62940.1 | Thale cress | nucleus | 37.82 | 27.96 |
| GSMUA_Achr11P... | Banana | nucleus | 27.64 | 27.94 |
| GSMUA_Achr11P... | Banana | nucleus | 29.82 | 27.89 |
| GSMUA_Achr8P11850_001 | Banana | nucleus | 30.18 | 27.85 |
| CDX84369 | Canola | nucleus | 37.09 | 27.49 |
| Bra010136.1-P | Field mustard | nucleus | 36.73 | 27.45 |
| GSMUA_Achr4P27160_001 | Banana | nucleus | 27.27 | 26.79 |
| GSMUA_Achr1P20550_001 | Banana | nucleus | 26.18 | 26.67 |
| GSMUA_Achr10P... | Banana | nucleus | 27.27 | 26.32 |
| GSMUA_Achr10P... | Banana | nucleus | 25.82 | 26.1 |
| GSMUA_Achr11P... | Banana | nucleus | 28.0 | 26.01 |
| GSMUA_Achr11P... | Banana | nucleus | 24.36 | 25.28 |
| GSMUA_Achr5P28660_001 | Banana | nucleus | 25.09 | 24.91 |
| GSMUA_Achr9P03270_001 | Banana | nucleus | 19.64 | 24.32 |
| GSMUA_Achr3P13830_001 | Banana | nucleus | 24.0 | 24.26 |
| GSMUA_Achr5P23930_001 | Banana | nucleus | 17.09 | 24.1 |
| GSMUA_Achr5P15160_001 | Banana | nucleus | 25.45 | 23.97 |
| GSMUA_Achr5P07290_001 | Banana | nucleus | 23.64 | 23.72 |
| GSMUA_Achr10P... | Banana | nucleus | 24.36 | 23.1 |
| GSMUA_Achr6P33410_001 | Banana | nucleus | 20.73 | 23.08 |
| GSMUA_Achr5P01010_001 | Banana | nucleus | 21.45 | 22.78 |
| GSMUA_Achr1P03930_001 | Banana | nucleus | 21.09 | 22.57 |
| GSMUA_Achr8P32880_001 | Banana | nucleus | 20.0 | 22.0 |
| GSMUA_Achr9P04290_001 | Banana | nucleus | 23.27 | 21.99 |
| GSMUA_Achr6P19530_001 | Banana | nucleus | 19.27 | 21.46 |
| GSMUA_Achr8P02600_001 | Banana | nucleus | 21.82 | 21.28 |
| GSMUA_Achr1P17670_001 | Banana | nucleus | 16.73 | 21.2 |
| GSMUA_Achr6P25190_001 | Banana | nucleus | 19.64 | 21.01 |
| GSMUA_Achr5P07150_001 | Banana | nucleus | 25.09 | 20.91 |
| GSMUA_Achr5P29110_001 | Banana | nucleus | 25.45 | 20.59 |
| GSMUA_Achr3P10670_001 | Banana | nucleus | 17.45 | 20.25 |
| GSMUA_Achr10P... | Banana | nucleus | 24.73 | 20.18 |
| GSMUA_Achr9P25010_001 | Banana | nucleus | 21.82 | 19.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.27 | 19.0 |
| GSMUA_Achr3P29620_001 | Banana | nucleus | 19.64 | 18.95 |
| GSMUA_Achr11P... | Banana | nucleus | 24.73 | 18.94 |
| GSMUA_Achr10P... | Banana | nucleus | 20.0 | 18.84 |
| GSMUA_Achr6P34180_001 | Banana | nucleus | 22.18 | 18.37 |
| GSMUA_Achr9P26560_001 | Banana | nucleus | 21.09 | 18.3 |
| GSMUA_Achr8P02840_001 | Banana | nucleus | 20.36 | 18.24 |
| GSMUA_Achr9P09650_001 | Banana | nucleus | 20.0 | 18.21 |
| GSMUA_Achr7P27030_001 | Banana | nucleus, plastid | 21.45 | 18.1 |
| GSMUA_Achr9P11530_001 | Banana | nucleus, plastid | 23.64 | 17.96 |
| GSMUA_Achr8P02150_001 | Banana | nucleus | 21.45 | 17.77 |
| GSMUA_Achr8P15860_001 | Banana | nucleus, plastid | 23.27 | 17.58 |
| GSMUA_Achr10P... | Banana | nucleus | 21.82 | 17.24 |
| GSMUA_Achr2P09970_001 | Banana | nucleus | 26.91 | 17.13 |
| GSMUA_Achr4P16590_001 | Banana | nucleus | 21.09 | 16.91 |
| GSMUA_Achr5P12010_001 | Banana | nucleus | 20.36 | 15.77 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr2G23020_001 | EnsemblPlants:GSMUA_Achr2P23020_001 | EnsemblPlants:GSMUA_Achr2T23020_001 |
| InterPro:IPR003851 | UniProt:M0SAE3 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF80 | UniParc:UPI000294CD54 | InterPro:Znf_Dof | SEG:seg | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G23020_001]
Coordinates
chr2:-:21870927..21871754
Molecular Weight (calculated)
29883.7 Da
IEP (calculated)
7.555
GRAVY (calculated)
-0.391
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSPSSEV MSCSRPPPVM EERLRPQHDQ ALKCPRCDST HTKFCYYNNY SLSQPRYLCK TCRRYWTKGG TLRNVPVGGG CRKNKRSGAK KTADLLHPSA
101: SSSLKEATSS CLHQPFPLVQ LPHLESIFTN TCRNIDFMEC KYDLMLDNPM DGLDLMDGKL GAILTRNQLP LGGVNPGLGE AASHGSASAS FHSMIGTCGF
201: CIDGNHAGLM EACRGLALPF DGHEESNSVE VKPGDWINLS TQWADQCCVD AGRAVMGCDK GLASWAGLMN GMAPR
101: SSSLKEATSS CLHQPFPLVQ LPHLESIFTN TCRNIDFMEC KYDLMLDNPM DGLDLMDGKL GAILTRNQLP LGGVNPGLGE AASHGSASAS FHSMIGTCGF
201: CIDGNHAGLM EACRGLALPF DGHEESNSVE VKPGDWINLS TQWADQCCVD AGRAVMGCDK GLASWAGLMN GMAPR
001: MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
101: KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL
201: SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ
301: RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING LGSSWNGLMN GYGTSTKTNS LV
Arabidopsis Description
DOF5.6HCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UF22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.