Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P17910_001 | Banana | nucleus | 78.32 | 69.14 |
| KRG91757 | Soybean | mitochondrion, nucleus | 58.74 | 59.15 |
| KRH35019 | Soybean | nucleus, plastid | 58.74 | 53.5 |
| PGSC0003DMT400056527 | Potato | nucleus | 59.44 | 53.12 |
| Solyc04g072300.1.1 | Tomato | mitochondrion, nucleus | 58.74 | 52.5 |
| GSMUA_Achr7P00350_001 | Banana | nucleus | 28.67 | 37.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.97 | 37.04 |
| GSMUA_Achr7P03640_001 | Banana | nucleus | 33.57 | 28.92 |
| GSMUA_Achr1P25890_001 | Banana | nucleus | 31.47 | 28.3 |
| GSMUA_Achr6P00240_001 | Banana | nucleus | 32.87 | 27.33 |
| GSMUA_Achr3P13010_001 | Banana | nucleus | 28.67 | 26.8 |
| GSMUA_Achr8P06870_001 | Banana | nucleus | 34.27 | 26.49 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 31.47 | 26.47 |
| GSMUA_Achr4P11430_001 | Banana | nucleus | 30.07 | 26.22 |
| GSMUA_Achr3P29290_001 | Banana | nucleus | 28.67 | 25.79 |
| GSMUA_Achr8P33590_001 | Banana | nucleus | 33.57 | 25.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.47 | 25.42 |
| GSMUA_Achr5P26850_001 | Banana | nucleus | 33.57 | 25.13 |
| GSMUA_Achr4P04060_001 | Banana | mitochondrion | 27.27 | 24.68 |
| Bra026949.1-P | Field mustard | nucleus | 37.76 | 24.43 |
| AT1G12890.1 | Thale cress | nucleus | 37.06 | 24.2 |
| GSMUA_Achr4P06170_001 | Banana | nucleus | 30.77 | 23.78 |
| GSMUA_Achr6P01440_001 | Banana | nucleus | 30.77 | 23.66 |
| GSMUA_Achr4P06660_001 | Banana | nucleus | 31.47 | 23.44 |
| GSMUA_Achr3P23710_001 | Banana | nucleus | 32.17 | 22.77 |
| GSMUA_Achr8P15830_001 | Banana | nucleus | 31.47 | 22.61 |
| CDY11748 | Canola | nucleus | 36.36 | 22.51 |
| CDX94591 | Canola | nucleus | 37.76 | 22.41 |
| Bra030076.1-P | Field mustard | nucleus | 37.76 | 22.41 |
| Bra010901.1-P | Field mustard | nucleus | 36.36 | 22.22 |
| CDX90126 | Canola | nucleus | 36.36 | 22.22 |
| CDY15690 | Canola | nucleus | 37.06 | 22.18 |
| GSMUA_Achr1P18230_001 | Banana | nucleus | 29.37 | 22.11 |
| GSMUA_Achr9P11480_001 | Banana | nucleus | 34.27 | 21.68 |
| AT1G28160.1 | Thale cress | nucleus | 37.06 | 21.63 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 40.56 | 21.56 |
| GSMUA_Achr8P03550_001 | Banana | nucleus | 32.17 | 21.3 |
| GSMUA_Achr10P... | Banana | nucleus | 38.46 | 21.07 |
| GSMUA_Achr8P30180_001 | Banana | nucleus | 45.45 | 20.83 |
| GSMUA_Achr4P23620_001 | Banana | nucleus | 32.17 | 20.54 |
| GSMUA_Achr5P09940_001 | Banana | mitochondrion | 33.57 | 20.17 |
| GSMUA_Achr3P19420_001 | Banana | nucleus | 39.86 | 20.07 |
| GSMUA_Achr6P00250_001 | Banana | nucleus | 32.87 | 19.67 |
| GSMUA_Achr10P... | Banana | nucleus | 29.37 | 18.92 |
| GSMUA_Achr4P33270_001 | Banana | nucleus | 34.97 | 18.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.97 | 17.86 |
| GSMUA_Achr9P01870_001 | Banana | nucleus | 34.27 | 17.01 |
| CDY16037 | Canola | nucleus | 22.38 | 16.16 |
| CDY26598 | Canola | nucleus | 21.68 | 15.66 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G35320_001 | EnsemblPlants:GSMUA_Achr6P35320_001 |
| EnsemblPlants:GSMUA_Achr6T35320_001 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0TCX5 | PFAM:PF00847 | PIRSF:PIRSF038123 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF39 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0002969E96 | SEG:seg | : | : | : | : |
Description
AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G35320_001]
Coordinates
chr6:+:33578565..33578996
Molecular Weight (calculated)
16182.9 Da
IEP (calculated)
8.206
GRAVY (calculated)
-0.605
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFPQAILH RSRRRRTRAS SEYLGVRRRP WGRYAAEIRN PYTKERHWLG TFDTAEEAAL AYDLSSISFC GPARARTNFR YPFLPAPSPP PPPPPPPPSP
101: LSEETNVCYF EVDSTGDDDS MTIAVILQSF RQSTSLSSSS LLF
101: LSEETNVCYF EVDSTGDDDS MTIAVILQSF RQSTSLSSSS LLF
001: MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM
Arabidopsis Description
ERF088Ethylene-responsive transcription factor ERF088 [Source:UniProtKB/Swiss-Prot;Acc:Q3E703]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.