CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35019	Soybean	nucleus, plastid	92.25	83.44
GSMUA_Achr6P35320_001	Banana	nucleus	59.15	58.74
Solyc04g072300.1.1	Tomato	mitochondrion, nucleus	65.49	58.12
PGSC0003DMT400056527	Potato	nucleus	65.49	58.12
GSMUA_Achr7P17910_001	Banana	nucleus	59.86	52.47
Os08t0173700-01	Rice	nucleus	56.34	45.71
KXG24553	Sorghum	nucleus	54.23	44.77
KRH32582	Soybean	nucleus	26.06	40.66
Zm00001d024436_P001	Maize	nucleus	52.82	40.32
KRH26242	Soybean	nucleus	26.76	29.46
KRH55195	Soybean	nucleus	33.1	25.68
KRH21385	Soybean	nucleus	28.87	25.15
KRH10926	Soybean	nucleus	29.58	24.42
KRH27281	Soybean	nucleus	33.1	24.35
KRH22040	Soybean	nucleus	33.1	24.35
AT1G12890.1	Thale cress	nucleus	35.92	23.29
Bra026949.1-P	Field mustard	nucleus	35.92	23.08
KRH45546	Soybean	nucleus	28.17	22.22
KRH67315	Soybean	nucleus	26.76	22.09
CDY11748	Canola	nucleus	35.92	22.08
Bra010901.1-P	Field mustard	nucleus	35.92	21.79
CDX90126	Canola	nucleus	35.92	21.79
Bra030076.1-P	Field mustard	nucleus	36.62	21.58
CDX94591	Canola	nucleus	36.62	21.58
CDY15690	Canola	nucleus	35.92	21.34
AT1G28160.1	Thale cress	nucleus	36.62	21.22
KRH46237	Soybean	nucleus	30.99	20.95
KRH06790	Soybean	nucleus	34.51	20.85
KRG98699	Soybean	nucleus	30.99	20.75
KRH14810	Soybean	nucleus	30.28	20.38
KRH55920	Soybean	nucleus	29.58	20.19
KRH14334	Soybean	nucleus	30.99	19.82
KRH73797	Soybean	nucleus	30.99	19.82
KRH21384	Soybean	nucleus	30.99	19.82
KRH73332	Soybean	nucleus	29.58	19.53
KRH25634	Soybean	nucleus	28.17	19.51
KRH10927	Soybean	nucleus	29.58	19.18
KRH08427	Soybean	nucleus	36.62	18.98
KRH70088	Soybean	nucleus	36.62	18.98
KRH11206	Soybean	nucleus	37.32	16.99
KRH21045	Soybean	nucleus	36.62	16.15
KRH45585	Soybean	nucleus	39.44	15.82
KRG99434	Soybean	nucleus	39.44	15.82
KRH74517	Soybean	nucleus	38.73	15.15
CDY16037	Canola	nucleus	21.13	15.15
CDY26598	Canola	nucleus	20.42	14.65
KRH50906	Soybean	nucleus	33.8	13.87
KRH02219	Soybean	nucleus	34.51	13.84
KRH69639	Soybean	nucleus	38.03	13.81
KRH75649	Soybean	nucleus	21.83	11.19

Protein Annotations

EntrezGene:100809161	Gene3D:3.30.730.10	MapMan:35.1	EMBL:ACUP02012706	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_20G172800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K7N413	EnsemblPlants:KRG91757	ProteinID:KRG91757
ProteinID:KRG91757.1	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
PANTHER:PTHR31677:SF44	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233DAB6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:41030875..41031618

Molecular Weight (calculated)

15962.1 Da

IEP (calculated)

7.913

GRAVY (calculated)

-0.447

Length

142 amino acids

Sequence
(BLAST)

001: MENLPPLMCK NLIRKRTSRR STMYLGVRKR PWGRYAAEIR NPYTKERRWL GTFDTAEEAA IAYDLSSIKI CGINARTNFH YPFVSLPPPP MSLPPPPPPP
101: TPELDPSVEV CPEMNAAYDG DDESLVIASI LQSFSNTGNC SF

Best Arabidopsis Sequence Match ( AT1G12890.1 )
(BLAST)

001: MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM

Arabidopsis Description

ERF088Ethylene-responsive transcription factor ERF088 [Source:UniProtKB/Swiss-Prot;Acc:Q3E703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.