Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026949.1-P | Field mustard | nucleus | 67.12 | 66.52 |
| CDY26598 | Canola | nucleus | 56.62 | 62.63 |
| CDY16037 | Canola | nucleus | 54.34 | 60.1 |
| GSMUA_Achr6P35320_001 | Banana | nucleus | 24.2 | 37.06 |
| KRG91757 | Soybean | mitochondrion, nucleus | 23.29 | 35.92 |
| KXG24553 | Sorghum | nucleus | 26.48 | 33.72 |
| GSMUA_Achr7P17910_001 | Banana | nucleus | 24.2 | 32.72 |
| Os08t0173700-01 | Rice | nucleus | 26.03 | 32.57 |
| KRH35019 | Soybean | nucleus, plastid | 23.29 | 32.48 |
| PGSC0003DMT400056527 | Potato | nucleus | 23.29 | 31.88 |
| Solyc04g072300.1.1 | Tomato | mitochondrion, nucleus | 23.29 | 31.88 |
| AT5G13910.1 | Thale cress | nucleus | 30.59 | 31.75 |
| Zm00001d024436_P001 | Maize | nucleus | 26.48 | 31.18 |
| AT1G28160.1 | Thale cress | nucleus | 30.14 | 26.94 |
| AT1G53170.1 | Thale cress | nucleus | 21.46 | 25.41 |
| AT3G15210.1 | Thale cress | nucleus | 24.2 | 23.87 |
| AT1G28370.2 | Thale cress | mitochondrion, nucleus, plastid | 21.46 | 23.04 |
| AT1G28360.1 | Thale cress | nucleus | 19.63 | 22.75 |
| AT5G44210.1 | Thale cress | nucleus | 20.09 | 22.0 |
| AT1G50640.1 | Thale cress | mitochondrion, nucleus | 21.46 | 20.89 |
| AT1G03800.1 | Thale cress | nucleus | 22.37 | 20.0 |
| AT3G20310.1 | Thale cress | nucleus | 21.46 | 19.26 |
| AT1G24590.1 | Thale cress | nucleus | 26.48 | 18.95 |
| AT5G18560.1 | Thale cress | nucleus | 28.77 | 18.1 |
| AT1G12980.1 | Thale cress | nucleus | 26.03 | 17.38 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EntrezGene:837847 | UniProt:A0A178W8Q4 | EMBL:AB493454 | EMBL:AC012187 |
| ProteinID:AEE28943.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT1G12890 | EnsemblPlantsGene:AT1G12890 | RefSeq:AT1G12890 |
| TAIR:AT1G12890 | RefSeq:AT1G12890-TAIR-G | EnsemblPlants:AT1G12890.1 | TAIR:AT1G12890.1 | Unigene:At.51591 | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009873 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_172749.1 | ProteinID:OAP13773.1 |
| PFAM:PF00847 | PO:PO:0000293 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF9 |
| UniProt:Q3E703 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0000162D55 | SEG:seg | : |
Description
ERF088Ethylene-responsive transcription factor ERF088 [Source:UniProtKB/Swiss-Prot;Acc:Q3E703]
Coordinates
chr1:+:4391671..4392393
Molecular Weight (calculated)
25011.8 Da
IEP (calculated)
5.544
GRAVY (calculated)
-0.812
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.