Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006222.1-P | Field mustard | nucleus | 82.94 | 82.94 |
| CDX70526 | Canola | nucleus | 81.99 | 81.6 |
| CDX78545 | Canola | nucleus | 81.04 | 80.66 |
| CDX91091 | Canola | nucleus | 83.89 | 52.06 |
| Bra008793.1-P | Field mustard | nucleus | 78.2 | 51.4 |
| CDY72607 | Canola | nucleus | 78.67 | 51.39 |
| Bra023440.1-P | Field mustard | nucleus | 81.99 | 51.34 |
| CDX85621 | Canola | nucleus | 80.09 | 49.42 |
| VIT_14s0068g00860.t01 | Wine grape | nucleus | 56.4 | 45.77 |
| KRH06790 | Soybean | nucleus | 49.29 | 44.26 |
| KRH70088 | Soybean | nucleus | 54.5 | 41.97 |
| KRH08427 | Soybean | nucleus | 51.18 | 39.42 |
| PGSC0003DMT400005596 | Potato | nucleus, plastid | 36.49 | 39.29 |
| AT1G28160.1 | Thale cress | nucleus | 42.18 | 36.33 |
| TraesCS2A01G288700.1 | Wheat | plastid | 43.6 | 35.11 |
| TraesCS2B01G305500.1 | Wheat | plastid | 43.13 | 34.73 |
| TraesCS2D01G286900.1 | Wheat | plastid | 43.13 | 34.73 |
| HORVU2Hr1G071470.1 | Barley | plastid | 43.13 | 34.6 |
| Os02t0520000-00 | Rice | nucleus | 38.86 | 34.31 |
| Zm00001d003871_P001 | Maize | plastid | 43.6 | 33.95 |
| Zm00001d025298_P001 | Maize | plastid | 43.13 | 33.46 |
| Os04t0399800-00 | Rice | nucleus | 45.97 | 33.22 |
| GSMUA_Achr10P... | Banana | nucleus | 40.76 | 32.95 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 41.71 | 32.71 |
| Zm00001d016623_P001 | Maize | nucleus | 40.76 | 32.45 |
| EES10693 | Sorghum | plastid | 43.13 | 31.82 |
| PGSC0003DMT400005585 | Potato | nucleus, plastid | 43.6 | 31.72 |
| Solyc11g045680.1.1 | Tomato | nucleus, plastid | 43.6 | 31.62 |
| KXG30301 | Sorghum | nucleus, plastid | 41.23 | 31.52 |
| AT1G12890.1 | Thale cress | nucleus | 31.75 | 30.59 |
| Solyc11g045690.1.1 | Tomato | nucleus, plastid | 41.71 | 29.14 |
| AT1G53170.1 | Thale cress | nucleus | 23.22 | 26.49 |
| AT1G28370.2 | Thale cress | mitochondrion, nucleus, plastid | 24.17 | 25.0 |
| AT1G28360.1 | Thale cress | nucleus | 22.27 | 24.87 |
| AT3G15210.1 | Thale cress | nucleus | 26.07 | 24.77 |
| AT5G44210.1 | Thale cress | nucleus | 23.22 | 24.5 |
| AT1G50640.1 | Thale cress | mitochondrion, nucleus | 24.64 | 23.11 |
| AT1G24590.1 | Thale cress | nucleus | 30.81 | 21.24 |
| AT5G18560.1 | Thale cress | nucleus | 33.65 | 20.4 |
| AT3G20310.1 | Thale cress | nucleus | 23.22 | 20.08 |
| AT1G03800.1 | Thale cress | nucleus | 22.75 | 19.59 |
| AT1G12980.1 | Thale cress | nucleus | 27.01 | 17.38 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EntrezGene:831238 | UniProt:A0A178UQP2 | ProteinID:AAF32292.1 | ProteinID:AED91958.1 |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT5G13910 | EnsemblPlantsGene:AT5G13910 | RefSeq:AT5G13910 | TAIR:AT5G13910 |
| RefSeq:AT5G13910-TAIR-G | EnsemblPlants:AT5G13910.1 | TAIR:AT5G13910.1 | EMBL:AY560852 | ProteinID:BAB11119.1 | EMBL:BT024919 |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009740 | GO:GO:0009791 | GO:GO:0009873 |
| GO:GO:0009987 | GO:GO:0010030 | InterPro:IPR001471 | InterPro:IPR036955 | Symbol:LEP | RefSeq:NP_196895.1 |
| ProteinID:OAO96229.1 | PFAM:PF00847 | PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0001054 | PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF40 | UniProt:Q9M644 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00000A1391 |
| SEG:seg | : | : | : | : | : |
Description
LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
Coordinates
chr5:-:4482128..4483247
Molecular Weight (calculated)
23682.1 Da
IEP (calculated)
4.802
GRAVY (calculated)
-0.909
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.