Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005596 | Potato | nucleus, plastid | 59.27 | 91.33 |
| Solyc11g045680.1.1 | Tomato | nucleus, plastid | 82.78 | 85.91 |
| AT5G13910.1 | Thale cress | nucleus | 29.14 | 41.71 |
| CDX70526 | Canola | nucleus | 28.81 | 41.04 |
| Bra006222.1-P | Field mustard | nucleus | 28.48 | 40.76 |
| CDX78545 | Canola | nucleus | 28.15 | 40.09 |
| KRH06790 | Soybean | nucleus | 31.13 | 40.0 |
| KRH70088 | Soybean | nucleus | 35.43 | 39.05 |
| KRH08427 | Soybean | nucleus | 34.11 | 37.59 |
| VIT_14s0068g00860.t01 | Wine grape | nucleus | 31.46 | 36.54 |
| Solyc04g072300.1.1 | Tomato | mitochondrion, nucleus | 17.88 | 33.75 |
| HORVU2Hr1G071470.1 | Barley | plastid | 28.48 | 32.7 |
| TraesCS2A01G288700.1 | Wheat | plastid | 27.81 | 32.06 |
| TraesCS2B01G305500.1 | Wheat | plastid | 27.81 | 32.06 |
| TraesCS2D01G286900.1 | Wheat | plastid | 27.81 | 32.06 |
| Zm00001d025298_P001 | Maize | plastid | 28.48 | 31.62 |
| EES10693 | Sorghum | plastid | 29.8 | 31.47 |
| Os02t0520000-00 | Rice | nucleus | 24.5 | 30.96 |
| Zm00001d003871_P001 | Maize | plastid | 27.48 | 30.63 |
| Zm00001d016623_P001 | Maize | nucleus | 26.82 | 30.57 |
| Solyc02g077840.1.1 | Tomato | nucleus | 15.56 | 30.52 |
| KXG30301 | Sorghum | nucleus, plastid | 27.81 | 30.43 |
| GSMUA_Achr10P... | Banana | nucleus | 25.5 | 29.5 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 25.5 | 28.62 |
| Os04t0399800-00 | Rice | nucleus | 27.48 | 28.42 |
| Bra008793.1-P | Field mustard | nucleus | 28.15 | 26.48 |
| CDY72607 | Canola | nucleus | 28.15 | 26.32 |
| CDX91091 | Canola | nucleus | 28.48 | 25.29 |
| Bra023440.1-P | Field mustard | nucleus | 28.15 | 25.22 |
| CDX85621 | Canola | nucleus | 28.15 | 24.85 |
| Solyc07g049490.1.1 | Tomato | nucleus | 16.23 | 24.75 |
| Solyc12g005960.1.1 | Tomato | nucleus | 14.9 | 23.32 |
| Solyc03g006320.1.1 | Tomato | nucleus, plastid | 16.56 | 23.15 |
| Solyc10g006130.1.1 | Tomato | mitochondrion, nucleus | 16.56 | 22.62 |
| Solyc07g053740.1.1 | Tomato | nucleus | 16.56 | 22.22 |
| Solyc10g009110.1.1 | Tomato | nucleus | 15.89 | 21.62 |
| Solyc07g064890.1.1 | Tomato | nucleus | 16.56 | 20.83 |
| Solyc01g067540.1.1 | Tomato | nucleus | 21.52 | 20.25 |
| Solyc05g013540.1.1 | Tomato | nucleus | 21.85 | 17.1 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:K4D8N3 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF9 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc11g045690.1 | EnsemblPlants:Solyc11g045690.1.1 | UniParc:UPI000276A900 | SEG:seg | : |
Description
No Description!
Coordinates
chr11:-:28035303..28036557
Molecular Weight (calculated)
34738.3 Da
IEP (calculated)
6.073
GRAVY (calculated)
-1.205
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLIKSSTSS STSTSRKPRK NNGTSNQSVK QKTEEQQSNF RYLGVRRRPW GRYAAEIRDP NTKERHWLGT FDTAEEAALS YDRAARSMRV NNKSNKPNRT
101: NFVYSDMPHG YSVTCIISPD DQYQHHHHHH HQQQQQQQQQ QQQQQQQQHL LVFDQTENAP APNADYGAHF SQFSLSNMNN VGGDSCDGVE FVSQQYYNPN
201: YDMHMEDCYR YNSKNKTTTE LPPLPEDITS SGNYYNLNSE FPNSEMGYDS KNEMIIGTNN EYGASTMTTT TAGNFSYFGF DDCLQPLQDD PSNNNSLGYW
301: FS
101: NFVYSDMPHG YSVTCIISPD DQYQHHHHHH HQQQQQQQQQ QQQQQQQQHL LVFDQTENAP APNADYGAHF SQFSLSNMNN VGGDSCDGVE FVSQQYYNPN
201: YDMHMEDCYR YNSKNKTTTE LPPLPEDITS SGNYYNLNSE FPNSEMGYDS KNEMIIGTNN EYGASTMTTT TAGNFSYFGF DDCLQPLQDD PSNNNSLGYW
301: FS
001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
Arabidopsis Description
LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.