Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78545 | Canola | nucleus | 94.34 | 94.34 |
| AT5G13910.1 | Thale cress | nucleus | 81.6 | 81.99 |
| CDX91091 | Canola | nucleus | 85.38 | 53.24 |
| CDX85621 | Canola | nucleus | 82.08 | 50.88 |
| CDY72607 | Canola | nucleus | 76.42 | 50.15 |
| VIT_14s0068g00860.t01 | Wine grape | nucleus | 53.77 | 43.85 |
| KRH06790 | Soybean | nucleus | 47.17 | 42.55 |
| KRH70088 | Soybean | nucleus | 52.36 | 40.51 |
| PGSC0003DMT400005596 | Potato | nucleus, plastid | 36.79 | 39.8 |
| KRH08427 | Soybean | nucleus | 49.53 | 38.32 |
| CDY15690 | Canola | nucleus | 41.04 | 36.4 |
| CDX94591 | Canola | nucleus | 41.04 | 36.1 |
| CDY11748 | Canola | nucleus | 39.15 | 35.93 |
| CDX90126 | Canola | nucleus | 39.15 | 35.47 |
| CDY25733 | Canola | nucleus | 21.7 | 33.33 |
| TraesCS2A01G288700.1 | Wheat | plastid | 41.04 | 33.21 |
| Zm00001d003871_P001 | Maize | plastid | 41.98 | 32.84 |
| TraesCS2B01G305500.1 | Wheat | plastid | 40.57 | 32.82 |
| TraesCS2D01G286900.1 | Wheat | plastid | 40.57 | 32.82 |
| HORVU2Hr1G071470.1 | Barley | plastid | 40.57 | 32.7 |
| Solyc11g045680.1.1 | Tomato | nucleus, plastid | 44.34 | 32.3 |
| Os02t0520000-00 | Rice | nucleus | 36.32 | 32.22 |
| Os04t0399800-00 | Rice | nucleus | 44.34 | 32.19 |
| PGSC0003DMT400005585 | Potato | nucleus, plastid | 43.4 | 31.72 |
| Zm00001d025298_P001 | Maize | plastid | 40.57 | 31.62 |
| GSMUA_Achr10P... | Banana | nucleus | 38.68 | 31.42 |
| Zm00001d016623_P001 | Maize | nucleus | 39.15 | 31.32 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 38.68 | 30.48 |
| CDY70796 | Canola | nucleus | 23.11 | 30.43 |
| CDY70175 | Canola | nucleus | 24.06 | 30.36 |
| CDY34104 | Canola | nucleus | 23.11 | 30.25 |
| CDY69368 | Canola | nucleus | 24.53 | 30.23 |
| CDX90146 | Canola | nucleus | 24.53 | 30.23 |
| KXG30301 | Sorghum | nucleus, plastid | 39.15 | 30.07 |
| EES10693 | Sorghum | plastid | 40.57 | 30.07 |
| CDY15673 | Canola | nucleus | 23.58 | 29.76 |
| CDY34105 | Canola | nucleus | 21.7 | 29.11 |
| Solyc11g045690.1.1 | Tomato | nucleus, plastid | 41.04 | 28.81 |
| CDY02523 | Canola | nucleus | 22.64 | 28.24 |
| CDX94610 | Canola | nucleus | 21.23 | 27.11 |
| CDX97640 | Canola | nucleus | 24.06 | 26.98 |
| CDY24111 | Canola | nucleus | 22.17 | 26.7 |
| CDX98534 | Canola | nucleus | 24.53 | 26.53 |
| CDX96955 | Canola | nucleus | 24.06 | 26.42 |
| CDY14914 | Canola | nucleus | 24.06 | 26.42 |
| CDY30806 | Canola | nucleus | 22.64 | 26.23 |
| CDX89866 | Canola | nucleus | 22.17 | 26.11 |
| CDX75817 | Canola | nucleus | 25.0 | 25.98 |
| CDX82442 | Canola | nucleus | 25.0 | 25.98 |
| CDY34107 | Canola | nucleus | 22.17 | 25.97 |
| CDY15674 | Canola | nucleus | 21.7 | 25.84 |
| CDY61213 | Canola | nucleus | 21.7 | 25.84 |
| CDY18185 | Canola | nucleus | 21.7 | 25.56 |
| CDY25874 | Canola | nucleus | 24.06 | 25.5 |
| CDY45936 | Canola | nucleus | 24.06 | 25.37 |
| CDY20105 | Canola | nucleus | 25.0 | 25.36 |
| CDY35734 | Canola | nucleus | 21.7 | 24.86 |
| CDX90145 | Canola | nucleus | 21.23 | 24.46 |
| CDY32314 | Canola | nucleus | 25.0 | 24.31 |
| CDY22810 | Canola | nucleus | 23.11 | 24.14 |
| CDY37113 | Canola | mitochondrion, nucleus | 23.11 | 23.56 |
| CDY26598 | Canola | nucleus | 21.7 | 23.23 |
| CDX82253 | Canola | nucleus | 23.11 | 22.79 |
| CDY16037 | Canola | nucleus | 21.23 | 22.73 |
| CDY36045 | Canola | nucleus | 23.11 | 22.58 |
| CDY68296 | Canola | nucleus | 33.96 | 22.29 |
| CDY02618 | Canola | nucleus | 34.43 | 21.99 |
| CDY03876 | Canola | nucleus | 30.66 | 21.74 |
| CDY36131 | Canola | nucleus | 30.66 | 21.74 |
| CDY51586 | Canola | nucleus | 30.19 | 21.69 |
| CDY61906 | Canola | cytosol | 13.68 | 21.48 |
| CDY13901 | Canola | nucleus | 33.96 | 21.43 |
| CDY24422 | Canola | nucleus | 30.19 | 21.4 |
| CDY58106 | Canola | nucleus | 33.49 | 21.39 |
| CDX88931 | Canola | nucleus | 32.08 | 20.67 |
| CDX70826 | Canola | nucleus | 31.6 | 20.24 |
| CDY46294 | Canola | nucleus | 13.68 | 20.14 |
| CDY16048 | Canola | nucleus | 27.36 | 19.86 |
| CDY26605 | Canola | nucleus | 26.89 | 19.39 |
| CDY19407 | Canola | nucleus | 27.83 | 18.67 |
| CDX98022 | Canola | nucleus | 4.72 | 5.05 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078C0V6 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX70526 |
| ProteinID:CDX70526 | ProteinID:CDX70526.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00140357001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF40 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EDCA98 | SEG:seg | : | : | : | : |
Description
BnaC03g06100D
Coordinates
chrLK031791:-:874183..874821
Molecular Weight (calculated)
23724.1 Da
IEP (calculated)
5.559
GRAVY (calculated)
-0.792
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSKTKKKQ EEVGTRFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAS RSMRGTRART NFVYSDMPHS SSVTSIVSPD DPPPPPPAAS
101: PTCPNDHVDY MLMFNQYSST DSPMLQPQSD QVDSSSYMFG DSPSCYSNSS CELPPLPSDL SSSCYSQQQW SVGDFSSANY FDGEYVHSPM FSRMPSVSDS
201: LTHGFNHFGS YN
101: PTCPNDHVDY MLMFNQYSST DSPMLQPQSD QVDSSSYMFG DSPSCYSNSS CELPPLPSDL SSSCYSQQQW SVGDFSSANY FDGEYVHSPM FSRMPSVSDS
201: LTHGFNHFGS YN
001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
Arabidopsis Description
LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.