Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15210.1 | CDX74753 | AT2G45640.1 | 16429262 |
| AT3G15210.1 | CDY18913 | AT2G45640.1 | 16429262 |
| AT3G15210.1 | CDY53883 | AT2G45640.1 | 16429262 |
| AT3G15210.1 | CDY60684 | AT2G45640.1 | 16429262 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97640 | Canola | nucleus | 92.86 | 96.3 |
| Bra027270.1-P | Field mustard | nucleus | 74.49 | 91.25 |
| CDX75817 | Canola | nucleus | 80.1 | 76.96 |
| CDX82442 | Canola | nucleus | 78.57 | 75.49 |
| AT3G15210.1 | Thale cress | nucleus | 84.69 | 74.77 |
| CDY20105 | Canola | nucleus | 78.06 | 73.21 |
| CDY32314 | Canola | nucleus | 78.57 | 70.64 |
| CDY02523 | Canola | nucleus | 60.71 | 70.0 |
| CDY25733 | Canola | nucleus | 46.94 | 66.67 |
| CDY61213 | Canola | nucleus | 59.18 | 65.17 |
| CDY24111 | Canola | nucleus | 57.14 | 63.64 |
| KRH26242 | Soybean | nucleus | 37.24 | 56.59 |
| CDX90146 | Canola | nucleus | 43.37 | 49.42 |
| CDY69368 | Canola | nucleus | 43.37 | 49.42 |
| CDY70175 | Canola | nucleus | 42.35 | 49.4 |
| CDY15673 | Canola | nucleus | 42.35 | 49.4 |
| CDY70796 | Canola | nucleus | 39.29 | 47.83 |
| CDY34104 | Canola | nucleus | 39.29 | 47.53 |
| CDY34105 | Canola | nucleus | 36.73 | 45.57 |
| CDY45936 | Canola | nucleus | 44.9 | 43.78 |
| CDY25874 | Canola | nucleus | 44.39 | 43.5 |
| CDY61906 | Canola | cytosol | 28.57 | 41.48 |
| CDX89866 | Canola | nucleus | 36.22 | 39.44 |
| CDY14914 | Canola | nucleus | 38.78 | 39.38 |
| CDY18185 | Canola | nucleus | 35.71 | 38.89 |
| CDX96955 | Canola | nucleus | 38.27 | 38.86 |
| CDY15674 | Canola | nucleus | 34.69 | 38.2 |
| CDY34107 | Canola | nucleus | 35.2 | 38.12 |
| CDX94610 | Canola | nucleus | 31.12 | 36.75 |
| CDX82253 | Canola | nucleus | 40.31 | 36.74 |
| CDY30806 | Canola | nucleus | 34.18 | 36.61 |
| CDY37113 | Canola | mitochondrion, nucleus | 38.78 | 36.54 |
| CDY35734 | Canola | nucleus | 34.18 | 36.22 |
| CDY22810 | Canola | nucleus | 37.24 | 35.96 |
| CDY36045 | Canola | nucleus | 39.8 | 35.94 |
| CDX90145 | Canola | nucleus | 33.16 | 35.33 |
| CDX70526 | Canola | nucleus | 26.53 | 24.53 |
| CDX78545 | Canola | nucleus | 26.02 | 24.06 |
| CDY11748 | Canola | nucleus | 25.51 | 21.64 |
| CDX94591 | Canola | nucleus | 26.53 | 21.58 |
| CDX90126 | Canola | nucleus | 25.51 | 21.37 |
| CDY15690 | Canola | nucleus | 26.02 | 21.34 |
| CDY26605 | Canola | nucleus | 28.57 | 19.05 |
| CDY16048 | Canola | nucleus | 28.06 | 18.84 |
| CDY36131 | Canola | nucleus | 28.57 | 18.73 |
| CDY03876 | Canola | nucleus | 28.06 | 18.39 |
| CDY24422 | Canola | nucleus | 28.06 | 18.39 |
| CDY51586 | Canola | nucleus | 27.55 | 18.31 |
| CDY16037 | Canola | nucleus | 18.37 | 18.18 |
| CDY26598 | Canola | nucleus | 18.37 | 18.18 |
| CDY19407 | Canola | nucleus | 28.57 | 17.72 |
| CDY68296 | Canola | nucleus | 28.06 | 17.03 |
| CDY72607 | Canola | nucleus | 28.06 | 17.03 |
| CDY02618 | Canola | nucleus | 28.57 | 16.87 |
| CDX88931 | Canola | nucleus | 27.55 | 16.41 |
| CDY13901 | Canola | nucleus | 28.06 | 16.37 |
| CDX70826 | Canola | nucleus | 27.55 | 16.31 |
| CDY58106 | Canola | nucleus | 27.55 | 16.27 |
| CDX91091 | Canola | nucleus | 27.04 | 15.59 |
| CDX85621 | Canola | nucleus | 27.04 | 15.5 |
| CDX98022 | Canola | nucleus | 6.12 | 6.06 |
| CDY46294 | Canola | nucleus | 3.06 | 4.17 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078ECQ5 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX98534 |
| ProteinID:CDX98534 | ProteinID:CDX98534.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00106179001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF19 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF39AC | SEG:seg | : | : | : | : |
Description
BnaC05g38410D
Coordinates
chrLK031905:+:813567..814473
Molecular Weight (calculated)
21306.5 Da
IEP (calculated)
9.329
GRAVY (calculated)
-0.413
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKMGLKPNP VTPNPTHYNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDKAARD FRGAKAKTNF LELNEKVLSG GGGFARSPSQ
101: SSTLDYASPP AVVTPATDGI VPPRLELSLG GGGACYQIPM ARPLYFLDLM GVSTKMACGA QSDSDSSSVV DFEVVMEKRS QPLDLDLNLL PPVEQA
101: SSTLDYASPP AVVTPATDGI VPPRLELSLG GGGACYQIPM ARPLYFLDLM GVSTKMACGA QSDSDSSSVV DFEVVMEKRS QPLDLDLNLL PPVEQA
001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
Arabidopsis Description
ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.