Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004926.1-P | Field mustard | mitochondrion | 99.34 | 99.34 |
| CDX74753 | Canola | mitochondrion | 97.37 | 96.73 |
| CDY60684 | Canola | mitochondrion | 46.71 | 88.75 |
| AT2G45640.1 | Thale cress | cytosol | 88.16 | 88.16 |
| CDY53883 | Canola | cytosol | 33.55 | 83.61 |
| KRH65197 | Soybean | nucleus | 73.68 | 74.17 |
| VIT_15s0048g01290.t01 | Wine grape | nucleus | 73.68 | 73.68 |
| KRH48306 | Soybean | cytosol | 34.87 | 73.61 |
| PGSC0003DMT400035608 | Potato | cytosol | 71.71 | 69.87 |
| Solyc05g047690.2.1 | Tomato | nucleus | 71.71 | 69.87 |
| GSMUA_Achr3P12560_001 | Banana | cytosol | 69.08 | 69.08 |
| Os02t0122000-01 | Rice | nucleus, plastid | 68.42 | 68.42 |
| TraesCS6A01G067100.1 | Wheat | nucleus | 65.13 | 66.0 |
| TraesCSU01G117100.1 | Wheat | cytosol | 65.13 | 66.0 |
| EES06194 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 65.13 | 65.13 |
| TraesCS6B01G090300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 65.13 | 65.13 |
| Zm00001d015058_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 65.13 | 65.13 |
| HORVU6Hr1G012050.4 | Barley | plastid | 65.13 | 49.5 |
| Zm00001d053919_P001 | Maize | plastid | 60.53 | 43.6 |
Protein Annotations
| EnsemblPlants:CDY18913 | EnsemblPlantsGene:GSBRNA2T00006116001 | Gene3D:3.10.20.550 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Hist_deAcase_cplx_SAP18 | InterPro:SAP18 |
| PANTHER:PTHR13082 | PFAM:PF06487 | PIRSF:PIRSF037637 | ProteinID:CDY18913 | ProteinID:CDY18913.1 | SEG:seg |
| UniParc:UPI0004EE7831 | UniProt:A0A078G2L8 | MapMan:12.3.2.4.3 | : | : | : |
Description
BnaC04g04370DBnaC04g04370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2L8]
Coordinates
chrLK032090:+:321836..323399
Molecular Weight (calculated)
17359.7 Da
IEP (calculated)
9.979
GRAVY (calculated)
-0.861
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETARRQGG GRPLPPPPRG VNQQPPRPKT EPVDREKTCP LLLRVFTKAG GHHTKEDYAV RGKEPKDEVQ IYTWKDANLR ELTDLVKEVS VAARRRDARL
101: SFAFVYPDKN GRFIVRQVGQ TMSYPNRKQP DDSKTLADLH FEIGDYLDVA IY
101: SFAFVYPDKN GRFIVRQVGQ TMSYPNRKQP DDSKTLADLH FEIGDYLDVA IY
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.