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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH14810
KRH26242
KRH51318
KRH52586
KRH60609
KRH61926
KRH73332

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G45640.1 KRH52586 AT1G22920.1 21798944
AT2G45640.1 KRH61926 AT1G22920.1 21798944
AT2G45640.1 KRH14810 AT1G50640.1 16429262
AT2G45640.1 KRH73332 AT1G50640.1 16429262
AT2G45640.1 KRH26242 AT3G15210.1 16429262
AT2G45640.1 KRH51318 AT4G38130.1 16429262
AT2G45640.1 KRH60609 AT4G38130.1 16429262
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH48306 Soybean cytosol 40.4 84.72
VIT_15s0048g01290.t01 Wine grape nucleus 84.11 83.55
Bra004926.1-P Field mustard mitochondrion 74.17 73.68
CDY18913 Canola mitochondrion 74.17 73.68
CDX74753 Canola mitochondrion 73.51 72.55
GSMUA_Achr3P12560_001 Banana cytosol 72.85 72.37
Os02t0122000-01 Rice nucleus, plastid 72.85 72.37
AT2G45640.1 Thale cress cytosol 71.52 71.05
PGSC0003DMT400035608 Potato cytosol 72.85 70.51
Solyc05g047690.2.1 Tomato nucleus 72.85 70.51
TraesCS6A01G067100.1 Wheat nucleus 68.21 68.67
TraesCSU01G117100.1 Wheat cytosol 68.21 68.67
EES06194 Sorghum cytosol, mitochondrion, nucleus, plastid 68.21 67.76
TraesCS6B01G090300.1 Wheat cytosol, mitochondrion, nucleus, plastid 68.21 67.76
Zm00001d015058_P002 Maize cytosol, mitochondrion, nucleus, plastid 68.21 67.76
CDY60684 Canola mitochondrion 33.77 63.75
CDY53883 Canola cytosol 23.84 59.02
HORVU6Hr1G012050.4 Barley plastid 67.55 51.0
Zm00001d053919_P001 Maize plastid 62.91 45.02
Protein Annotations
EMBL:ACUP02001315EMBL:BT091725EnsemblPlants:KRH65197EnsemblPlantsGene:GLYMA_03G019600EntrezGene:100526922Gene3D:3.10.20.550
InterPro:SAP18PANTHER:PTHR13082PFAM:PF06487ProteinID:KRH65197ProteinID:KRH65197.1SEG:seg
UniParc:UPI0001B151BEUniProt:C6T2R6MapMan:12.3.2.4.3:::
Description
hypothetical protein
Coordinates
chr3:+:2007617..2009871
Molecular Weight (calculated)
16778.2 Da
IEP (calculated)
10.011
GRAVY (calculated)
-0.616
Length
151 amino acids
Sequence
(BLAST)
001: MSDGGKRQGG RALPPPPRGP PPPPPSRPRL EPVDREKTCP LLLRVFTKIG SHHSMEDFAV RGKEPKDEVQ IYTWKDATLR ELTDLVKEVA PAARRRNAKL
101: SFAFVFPDKN GRFKVQEVGK TLSYGNGRLD DGKALAELGF EIGDYLDVAI L
Best Arabidopsis Sequence Match ( AT2G45640.1 )
(BLAST)
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.