Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06194 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 100.0 | 100.0 |
| Os02t0122000-01 | Rice | nucleus, plastid | 88.82 | 88.82 |
| TraesCSU01G117100.1 | Wheat | cytosol | 86.18 | 87.33 |
| TraesCS6A01G067100.1 | Wheat | nucleus | 86.18 | 87.33 |
| TraesCS6B01G090300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 86.18 | 86.18 |
| GSMUA_Achr3P12560_001 | Banana | cytosol | 78.29 | 78.29 |
| KRH48306 | Soybean | cytosol | 35.53 | 75.0 |
| VIT_15s0048g01290.t01 | Wine grape | nucleus | 70.39 | 70.39 |
| KRH65197 | Soybean | nucleus | 67.76 | 68.21 |
| Solyc05g047690.2.1 | Tomato | nucleus | 69.08 | 67.31 |
| Zm00001d053919_P001 | Maize | plastid | 93.42 | 67.3 |
| PGSC0003DMT400035608 | Potato | cytosol | 68.42 | 66.67 |
| HORVU6Hr1G012050.4 | Barley | plastid | 86.18 | 65.5 |
| CDX74753 | Canola | mitochondrion | 65.79 | 65.36 |
| CDY18913 | Canola | mitochondrion | 65.13 | 65.13 |
| Bra004926.1-P | Field mustard | mitochondrion | 65.13 | 65.13 |
| AT2G45640.1 | Thale cress | cytosol | 63.16 | 63.16 |
| CDY60684 | Canola | mitochondrion | 32.24 | 61.25 |
| CDY53883 | Canola | cytosol | 22.37 | 55.74 |
Protein Annotations
| EMBL:BT036852 | EMBL:EU972648 | EnsemblPlants:Zm00001d015058_P002 | EnsemblPlants:Zm00001d015058_T002 | EnsemblPlantsGene:Zm00001d015058 | EntrezGene:100194333 |
| Gene3D:3.10.20.550 | InterPro:SAP18 | PANTHER:PTHR13082 | PFAM:PF06487 | ProteinID:AQK67962.1 | ProteinID:AQK67963.1 |
| ProteinID:AQK67964.1 | SEG:seg | UniParc:UPI00017B71C9 | UniProt:B4FIB4 | MapMan:12.3.2.4.3 | : |
Description
Histone deacetylase complex subunit SAP18
Coordinates
chr5:-:73772339..73775788
Molecular Weight (calculated)
17129.8 Da
IEP (calculated)
10.223
GRAVY (calculated)
-0.511
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMGDMPMR PARPGPPMQH RGPPPMARLR PEPIDREKTC PLLLRVFTRV AGHHQNEEFA VRGKEPKDEV QIYTWKDATL RELTDLVKEV ALPARKRNAR
101: LSFAFVYPDK NGRFVVRQVG STFAYGHGRG DDAKTLAELG FQIGDYLSVA IM
101: LSFAFVYPDK NGRFVVRQVG STFAYGHGRG DDAKTLAELG FQIGDYLSVA IM
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.