Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 3
- plasma membrane 1
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45640.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT2G45640.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
| AT2G45640.1 | PGSC0003DMT400037359 | AT1G50640.1 | 16429262 |
| AT2G45640.1 | PGSC0003DMT400057443 | AT1G50640.1 | 16429262 |
| AT2G45640.1 | PGSC0003DMT400076252 | AT4G38130.1 | 16429262 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g047690.2.1 | Tomato | nucleus | 99.36 | 99.36 |
| VIT_15s0048g01290.t01 | Wine grape | nucleus | 73.08 | 75.0 |
| CDX74753 | Canola | mitochondrion | 71.79 | 73.2 |
| KRH65197 | Soybean | nucleus | 70.51 | 72.85 |
| Bra004926.1-P | Field mustard | mitochondrion | 69.87 | 71.71 |
| CDY18913 | Canola | mitochondrion | 69.87 | 71.71 |
| Os02t0122000-01 | Rice | nucleus, plastid | 69.23 | 71.05 |
| KRH48306 | Soybean | cytosol | 32.69 | 70.83 |
| AT2G45640.1 | Thale cress | cytosol | 68.59 | 70.39 |
| GSMUA_Achr3P12560_001 | Banana | cytosol | 67.95 | 69.74 |
| EES06194 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 66.67 | 68.42 |
| Zm00001d015058_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 66.67 | 68.42 |
| TraesCS6A01G067100.1 | Wheat | nucleus | 65.38 | 68.0 |
| TraesCSU01G117100.1 | Wheat | cytosol | 65.38 | 68.0 |
| TraesCS6B01G090300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 65.38 | 67.11 |
| CDY60684 | Canola | mitochondrion | 33.33 | 65.0 |
| CDY53883 | Canola | cytosol | 23.08 | 59.02 |
| HORVU6Hr1G012050.4 | Barley | plastid | 65.38 | 51.0 |
| Zm00001d053919_P001 | Maize | plastid | 62.18 | 45.97 |
Protein Annotations
| EntrezGene:102583352 | MapMan:12.3.2.4.3 | Gene3D:3.10.20.550 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009987 | InterPro:Hist_deAcase_cplx_SAP18 | UniProt:M1B2J3 | PFAM:PF06487 | EnsemblPlantsGene:PGSC0003DMG400013695 |
| PGSC:PGSC0003DMG400013695 | EnsemblPlants:PGSC0003DMT400035608 | PIRSF:PIRSF037637 | PANTHER:PTHR13082 | InterPro:SAP18 | UniParc:UPI00001BD594 |
| RefSeq:XP_006360642.1 | SEG:seg | : | : | : | : |
Description
P18 [Source:PGSC_GENE;Acc:PGSC0003DMG400013695]
Coordinates
chr5:+:43358329..43363227
Molecular Weight (calculated)
17807.6 Da
IEP (calculated)
10.391
GRAVY (calculated)
-0.552
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVQRRGRP LPPPPPRGPL GPPPQRIAPR PVPVDREKTC PLLLRVFTKV GGHHNVNEFA VRGKEPKDEV QIYTWMDATL RELTDLVKEV APEARRRDAI
101: LSFAFVYPDK RGRFVVREVG TTFSYPNMRR PDNGSKTLSE LKFQIGDYLD VAIMFQ
101: LSFAFVYPDK RGRFVVREVG TTFSYPNMRR PDNGSKTLSE LKFQIGDYLD VAIMFQ
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.