Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023440.1-P | Field mustard | nucleus | 94.71 | 95.55 |
| CDX85621 | Canola | nucleus | 94.41 | 93.86 |
| CDY72607 | Canola | nucleus | 84.71 | 89.16 |
| CDX78545 | Canola | nucleus | 53.82 | 86.32 |
| CDX70526 | Canola | nucleus | 53.24 | 85.38 |
| AT5G13910.1 | Thale cress | nucleus | 52.06 | 83.89 |
| KRH06790 | Soybean | nucleus | 29.71 | 42.98 |
| VIT_14s0068g00860.t01 | Wine grape | nucleus | 32.35 | 42.31 |
| KRH70088 | Soybean | nucleus | 32.06 | 39.78 |
| PGSC0003DMT400005596 | Potato | nucleus, plastid | 22.06 | 38.27 |
| KRH08427 | Soybean | nucleus | 30.29 | 37.59 |
| CDY11748 | Canola | nucleus | 24.71 | 36.36 |
| CDY15690 | Canola | nucleus | 25.29 | 35.98 |
| CDX90126 | Canola | nucleus | 24.71 | 35.9 |
| CDX94591 | Canola | nucleus | 25.29 | 35.68 |
| CDY25733 | Canola | nucleus | 13.82 | 34.06 |
| TraesCS2A01G288700.1 | Wheat | plastid | 25.88 | 33.59 |
| HORVU2Hr1G071470.1 | Barley | plastid | 25.88 | 33.46 |
| TraesCS2B01G305500.1 | Wheat | plastid | 25.59 | 33.21 |
| TraesCS2D01G286900.1 | Wheat | plastid | 25.59 | 33.21 |
| Os04t0399800-00 | Rice | nucleus | 27.94 | 32.53 |
| Zm00001d003871_P001 | Maize | plastid | 25.88 | 32.47 |
| Zm00001d025298_P001 | Maize | plastid | 25.88 | 32.35 |
| Os02t0520000-00 | Rice | nucleus | 22.65 | 32.22 |
| GSMUA_Achr10P... | Banana | nucleus | 24.41 | 31.8 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 25.0 | 31.6 |
| Zm00001d016623_P001 | Maize | nucleus | 24.41 | 31.32 |
| CDY34104 | Canola | nucleus | 14.71 | 30.86 |
| CDY70796 | Canola | nucleus | 14.41 | 30.43 |
| EES10693 | Sorghum | plastid | 25.59 | 30.42 |
| CDY70175 | Canola | nucleus | 15.0 | 30.36 |
| PGSC0003DMT400005585 | Potato | nucleus, plastid | 25.88 | 30.34 |
| KXG30301 | Sorghum | nucleus, plastid | 24.41 | 30.07 |
| Solyc11g045680.1.1 | Tomato | nucleus, plastid | 25.59 | 29.9 |
| CDY15673 | Canola | nucleus | 14.71 | 29.76 |
| CDY69368 | Canola | nucleus | 15.0 | 29.65 |
| CDX90146 | Canola | nucleus | 15.0 | 29.65 |
| CDY02523 | Canola | nucleus | 14.71 | 29.41 |
| CDY34105 | Canola | nucleus | 13.53 | 29.11 |
| Solyc11g045690.1.1 | Tomato | nucleus, plastid | 25.29 | 28.48 |
| CDY30806 | Canola | nucleus | 15.0 | 27.87 |
| CDX94610 | Canola | nucleus | 13.53 | 27.71 |
| CDY34107 | Canola | nucleus | 14.71 | 27.62 |
| CDY15674 | Canola | nucleus | 14.41 | 27.53 |
| CDX97640 | Canola | nucleus | 15.29 | 27.51 |
| CDY14914 | Canola | nucleus | 15.59 | 27.46 |
| CDX96955 | Canola | nucleus | 15.59 | 27.46 |
| CDY24111 | Canola | nucleus | 14.12 | 27.27 |
| CDX98534 | Canola | nucleus | 15.59 | 27.04 |
| CDY25874 | Canola | nucleus | 15.88 | 27.0 |
| CDY45936 | Canola | nucleus | 15.88 | 26.87 |
| CDX89866 | Canola | nucleus | 14.12 | 26.67 |
| CDY35734 | Canola | nucleus | 14.41 | 26.49 |
| CDX82442 | Canola | nucleus | 15.88 | 26.47 |
| CDX75817 | Canola | nucleus | 15.88 | 26.47 |
| CDY61213 | Canola | nucleus | 13.82 | 26.4 |
| CDY18185 | Canola | nucleus | 13.82 | 26.11 |
| CDX90145 | Canola | nucleus | 14.12 | 26.09 |
| CDY20105 | Canola | nucleus | 15.88 | 25.84 |
| CDY32314 | Canola | nucleus | 15.88 | 24.77 |
| CDY22810 | Canola | nucleus | 14.71 | 24.63 |
| CDY37113 | Canola | mitochondrion, nucleus | 14.71 | 24.04 |
| CDY26598 | Canola | nucleus | 13.82 | 23.74 |
| CDX82253 | Canola | nucleus | 14.71 | 23.26 |
| CDY16037 | Canola | nucleus | 13.53 | 23.23 |
| CDY36045 | Canola | nucleus | 14.71 | 23.04 |
| CDY68296 | Canola | nucleus | 21.47 | 22.6 |
| CDY58106 | Canola | nucleus | 21.47 | 21.99 |
| CDY02618 | Canola | nucleus | 21.47 | 21.99 |
| CDY36131 | Canola | nucleus | 19.12 | 21.74 |
| CDY13901 | Canola | nucleus | 21.47 | 21.73 |
| CDY61906 | Canola | cytosol | 8.53 | 21.48 |
| CDY03876 | Canola | nucleus | 18.82 | 21.4 |
| CDY24422 | Canola | nucleus | 18.82 | 21.4 |
| CDY51586 | Canola | nucleus | 18.53 | 21.36 |
| CDX88931 | Canola | nucleus | 20.29 | 20.97 |
| CDX70826 | Canola | nucleus | 19.71 | 20.24 |
| CDY16048 | Canola | nucleus | 17.06 | 19.86 |
| CDY26605 | Canola | nucleus | 16.76 | 19.39 |
| CDY19407 | Canola | nucleus | 17.65 | 18.99 |
| CDY46294 | Canola | nucleus | 7.65 | 18.06 |
| CDX98022 | Canola | nucleus | 2.94 | 5.05 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078DPF1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | EnsemblPlants:CDX91091 | ProteinID:CDX91091 | ProteinID:CDX91091.1 | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00151870001 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PFAM:PF14368 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF40 | SMART:SM00380 | SUPFAM:SSF47699 | SUPFAM:SSF54171 | UniParc:UPI0004EBA33B |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g05060D
Coordinates
chrLK031865:+:735924..737655
Molecular Weight (calculated)
37222.5 Da
IEP (calculated)
5.163
GRAVY (calculated)
-0.464
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSKSKKKQ EEAGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAA RSMRGTRART NFVYSDMPPS SSVTSIISPD DPTPPPPPPA
101: ATPPCSNDPV DYMMMFNQYS STDSPMLQPD QVESSYMFGG SPSCYSNSSS ELPPLPSDLS NSCYSQQPWS VEDYSSATYF EGEYVHSPMF STMPSVSDSL
201: PQAALLVVAN FGIIHTSGQS VSCLNQLAPC LNYLNGTKDV PEICCNPLKS VIRNNPECLC RMISNRGSSK AEQAGINVND AQMLPARCGE HVNPIACLTR
301: SRGSTNSDRS ASTEDSSSQS YWMTTLAFAV TLLSFILQIN
101: ATPPCSNDPV DYMMMFNQYS STDSPMLQPD QVESSYMFGG SPSCYSNSSS ELPPLPSDLS NSCYSQQPWS VEDYSSATYF EGEYVHSPMF STMPSVSDSL
201: PQAALLVVAN FGIIHTSGQS VSCLNQLAPC LNYLNGTKDV PEICCNPLKS VIRNNPECLC RMISNRGSSK AEQAGINVND AQMLPARCGE HVNPIACLTR
301: SRGSTNSDRS ASTEDSSSQS YWMTTLAFAV TLLSFILQIN
001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
Arabidopsis Description
LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.