Factsheet for Solyc07g064890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g047690.2.1
Solyc09g091440.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	Solyc05g047690.2.1	AT2G45640.1	16429262
AT1G50640.1	Solyc09g091440.2.1	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057443	Potato	nucleus	97.08	97.08
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	73.75	80.09
GSMUA_Achr3P13010_001	Banana	nucleus	44.17	69.28
VIT_12s0059g01460.t01	Wine grape	nucleus	52.5	61.76
KRH14810	Soybean	nucleus	54.17	61.61
CDY37113	Canola	mitochondrion, nucleus	52.92	61.06
GSMUA_Achr4P04060_001	Banana	mitochondrion	40.0	60.76
Bra018864.1-P	Field mustard	nucleus	51.25	60.59
CDY22810	Canola	nucleus	51.25	60.59
KRH73332	Soybean	nucleus	54.17	60.47
GSMUA_Achr4P06170_001	Banana	nucleus	46.25	60.0
AT1G50640.1	Thale cress	mitochondrion, nucleus	55.42	59.11
GSMUA_Achr1P18230_001	Banana	nucleus	46.25	58.42
Solyc07g049490.1.1	Tomato	nucleus	45.83	55.56
Solyc12g005960.1.1	Tomato	nucleus	38.33	47.67
GSMUA_Achr4P11430_001	Banana	nucleus	31.67	46.34
Solyc02g077840.1.1	Tomato	nucleus	29.58	46.1
Solyc07g053740.1.1	Tomato	nucleus	32.08	34.22
Solyc03g006320.1.1	Tomato	nucleus, plastid	30.0	33.33
Solyc10g009110.1.1	Tomato	nucleus	30.83	33.33
Solyc04g072300.1.1	Tomato	mitochondrion, nucleus	17.92	26.88
Solyc11g045680.1.1	Tomato	nucleus, plastid	21.25	17.53
Solyc11g045690.1.1	Tomato	nucleus, plastid	20.83	16.56
Solyc05g013540.1.1	Tomato	nucleus	25.42	15.8
Solyc01g067540.1.1	Tomato	nucleus	20.83	15.58

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AB675691	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
UniProt:G5EM37	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF17
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc07g064890.1	EnsemblPlants:Solyc07g064890.1.1	UniParc:UPI0001D64C43	SEG:seg

Description

Ethylene responsive factor [Source:UniProtKB/TrEMBL;Acc:G5EM37]

Coordinates

chr7:+:66870950..66871672

Molecular Weight (calculated)

26358.5 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.752

Length

240 amino acids

Sequence
(BLAST)

001: MRRSRAAAAA RQVPATEVPV PAPVAGEHNG SGGSKEIRFR GVRKRPWGRF AAEIRDPWKK TRVWLGTFDS AEDAARAYDA AARTLRGPKA KTNFPLPSSH
101: HLPPYPHHHQ FNQSINPNDP FVDSRLYSQD HPLVSQRPTS SSMSSTVESF SGPRQPPRQQ TAASVPSRKY PRSPPVVPDD CHSDCDSSSS VVEDGECDND
201: NIASSSFRKP LPFDLNLPAP MDDFSADAYA DDLHCTALCL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.