Factsheet for Bra018864.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004926.1-P
Bra040131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	Bra004926.1-P	AT2G45640.1	16429262
AT1G50640.1	Bra040131.1-P	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22810	Canola	nucleus	97.54	97.54
AT1G50640.1	Thale cress	mitochondrion, nucleus	76.85	69.33
Bra035792.1-P	Field mustard	mitochondrion, nucleus	76.85	69.33
Bra001784.1-P	Field mustard	nucleus	73.4	69.3
Bra038261.1-P	Field mustard	nucleus	72.91	66.07
GSMUA_Achr3P13010_001	Banana	nucleus	47.78	63.4
GSMUA_Achr4P04060_001	Banana	mitochondrion	46.31	59.49
GSMUA_Achr4P06170_001	Banana	nucleus	51.72	56.76
Solyc10g006130.1.1	Tomato	mitochondrion, nucleus	58.62	53.85
GSMUA_Achr1P18230_001	Banana	nucleus	50.25	53.68
KRH14810	Soybean	nucleus	54.19	52.13
KRH73332	Soybean	nucleus	55.17	52.09
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	57.14	52.02
VIT_12s0059g01460.t01	Wine grape	nucleus	52.22	51.96
Solyc07g064890.1.1	Tomato	nucleus	60.59	51.25
PGSC0003DMT400057443	Potato	nucleus	60.1	50.83
Bra032900.1-P	Field mustard	nucleus	35.96	46.2
GSMUA_Achr4P11430_001	Banana	nucleus	36.95	45.73
Bra030095.1-P	Field mustard	nucleus	37.44	45.24
Bra010880.1-P	Field mustard	nucleus	36.95	43.6
Bra032901.1-P	Field mustard	nucleus	34.48	43.21
Bra030957.1-P	Field mustard	nucleus	37.44	40.21
Bra027270.1-P	Field mustard	nucleus	30.54	38.75
Bra032898.1-P	Field mustard	nucleus	34.48	38.67
Bra030094.1-P	Field mustard	nucleus	33.5	38.2
Bra039658.1-P	Field mustard	nucleus	33.0	38.07
Bra038107.1-P	Field mustard	nucleus	36.45	37.0
Bra010881.1-P	Field mustard	nucleus	33.5	36.96
Bra015266.1-P	Field mustard	nucleus	32.51	36.07
Bra001588.1-P	Field mustard	nucleus	36.95	35.55
Bra021594.1-P	Field mustard	nucleus	35.96	34.27
Bra036016.1-P	Field mustard	nucleus	32.51	34.2
Bra003701.1-P	Field mustard	nucleus	30.05	31.28
Bra006325.1-P	Field mustard	nucleus	28.08	29.08
Bra006222.1-P	Field mustard	nucleus	23.65	22.75
Bra026949.1-P	Field mustard	nucleus	23.15	21.27
Bra030076.1-P	Field mustard	nucleus	24.14	20.33
Bra010901.1-P	Field mustard	nucleus	23.15	20.09
Bra006466.1-P	Field mustard	nucleus, plastid	27.59	18.06
Bra026942.1-P	Field mustard	nucleus	26.11	18.03
Bra002168.1-P	Field mustard	nucleus, plastid	28.08	17.98
Bra023684.1-P	Field mustard	nucleus, plastid	27.09	17.57
Bra012499.1-P	Field mustard	nucleus	25.12	17.29
Bra010972.1-P	Field mustard	nucleus	25.12	16.94
Bra019801.1-P	Field mustard	nucleus	26.6	16.62
Bra008793.1-P	Field mustard	nucleus	23.65	14.95
Bra023440.1-P	Field mustard	nucleus	24.63	14.84
Bra032881.1-P	Field mustard	nucleus	3.94	5.56

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra018864	EnsemblPlants:Bra018864.1
EnsemblPlants:Bra018864.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DQS1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF13	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000253EA85
SEG:seg	:	:	:	:	:

Description

AT1G50640 (E=3e-025) ERF3, ATERF3 | ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription repressor

Coordinates

chrA06:+:1548288..1548899

Molecular Weight (calculated)

22266.9 Da

IEP (calculated)

9.729

GRAVY (calculated)

-0.747

Length

203 amino acids

Sequence
(BLAST)

001: MRRGRVSTPV AANHNASIKE TRFRGVRKRP WGRYAAEIRD PYKKSRVWLG TFDSAVDAAR AYDAAARNLR GPKAKTNFPI ESPPSPPRID PFMDHRLYAG
101: ASSRPTSSSM SSTVESSSGQ RSSAAKPLST TAKRYPRTPP VVPEDCHSDC GSSSSVIDDG DDDIASSSRR REPPPFKFDL NFPPLDDVGL IDGVDDICTD
201: LRL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.