Factsheet for Bra030094.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010171.1-P
Bra012650.1-P
Bra012987.1-P
Bra013940.1-P
Bra019133.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	Bra010171.1-P	AT1G32540.1	21798944
AT1G28360.1	Bra012650.1-P	AT4G17680.1	21798944
AT1G28360.1	Bra013940.1-P	AT4G26000.1	21798944
AT1G28360.1	Bra019133.1-P	AT4G26000.1	21798944
AT1G28360.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15674	Canola	nucleus	99.44	99.44
CDX94610	Canola	nucleus	85.39	91.57
Bra032898.1-P	Field mustard	nucleus	78.09	76.8
AT1G28360.1	Thale cress	nucleus	80.34	75.66
Bra010881.1-P	Field mustard	nucleus	78.09	75.54
VIT_10s0003g00130.t01	Wine grape	nucleus	52.81	61.84
Solyc02g077840.1.1	Tomato	nucleus	49.44	57.14
KRH21385	Soybean	nucleus	52.25	57.06
PGSC0003DMT400076408	Potato	nucleus	48.88	56.86
KRH10926	Soybean	nucleus	50.56	52.33
GSMUA_Achr8P15820_001	Banana	nucleus	39.89	41.76
Zm00001d012584_P001	Maize	nucleus	37.08	40.0
TraesCS3B01G357600.1	Wheat	nucleus	37.64	38.51
Bra010880.1-P	Field mustard	nucleus	37.08	38.37
TraesCS3A01G328100.1	Wheat	nucleus	37.08	38.15
TraesCS3D01G321700.1	Wheat	nucleus	37.08	38.15
Bra030095.1-P	Field mustard	nucleus	35.39	37.5
Bra032900.1-P	Field mustard	nucleus	33.15	37.34
Bra032901.1-P	Field mustard	nucleus	33.71	37.04
EES01601	Sorghum	nucleus	36.52	36.72
Zm00001d043204_P001	Maize	nucleus	38.2	36.56
Bra027270.1-P	Field mustard	nucleus	32.02	35.62
Os05t0497200-01	Rice	nucleus	36.52	34.39
Bra039658.1-P	Field mustard	nucleus	33.15	33.52
Bra018864.1-P	Field mustard	nucleus	38.2	33.5
Bra030957.1-P	Field mustard	nucleus	35.39	33.33
Bra015266.1-P	Field mustard	nucleus	33.71	32.79
TraesCS1D01G314700.1	Wheat	nucleus	33.71	32.61
TraesCS1B01G326500.1	Wheat	nucleus	33.71	32.61
Bra001784.1-P	Field mustard	nucleus	39.33	32.56
HORVU1Hr1G067160.1	Barley	nucleus	34.83	32.29
Bra038107.1-P	Field mustard	nucleus	35.96	32.0
TraesCS1A01G314200.1	Wheat	nucleus	33.71	31.91
Bra001588.1-P	Field mustard	nucleus	37.64	31.75
Bra038261.1-P	Field mustard	nucleus	39.89	31.7
Bra036016.1-P	Field mustard	nucleus	34.27	31.61
Zm00001d010676_P001	Maize	nucleus	35.96	31.22
Bra035792.1-P	Field mustard	mitochondrion, nucleus	39.33	31.11
Bra021594.1-P	Field mustard	nucleus	37.08	30.99
Bra006325.1-P	Field mustard	nucleus	32.58	29.59
Zm00001d038584_P001	Maize	nucleus	34.27	29.05
Bra003701.1-P	Field mustard	nucleus	30.9	28.21
KXG22269	Sorghum	nucleus	33.71	28.04
Bra006222.1-P	Field mustard	nucleus	25.84	21.8
Bra026949.1-P	Field mustard	nucleus	26.4	21.27
Bra010901.1-P	Field mustard	nucleus	27.53	20.94
Bra030076.1-P	Field mustard	nucleus	28.09	20.75
Bra026942.1-P	Field mustard	nucleus	28.65	17.35
Bra010972.1-P	Field mustard	nucleus	28.65	16.94
Bra012499.1-P	Field mustard	nucleus	27.53	16.61
Bra006466.1-P	Field mustard	nucleus, plastid	27.53	15.81
Bra002168.1-P	Field mustard	nucleus, plastid	28.09	15.77
Bra019801.1-P	Field mustard	nucleus	28.65	15.69
Bra023684.1-P	Field mustard	nucleus, plastid	26.97	15.34
Bra008793.1-P	Field mustard	nucleus	26.97	14.95
Bra023440.1-P	Field mustard	nucleus	28.09	14.84
Bra032881.1-P	Field mustard	nucleus	3.93	4.86

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra030094
EnsemblPlants:Bra030094.1	EnsemblPlants:Bra030094.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EMS4	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000254111B
SEG:seg	:	:	:	:	:

Description

AT1G28360 (E=4e-063) ERF12, ATERF12 | ERF12 (ERF DOMAIN PROTEIN 12); DNA binding / transcription factor/ transcription repressor

Coordinates

chrA07:-:6616795..6617331

Molecular Weight (calculated)

19827.4 Da

IEP (calculated)

10.276

GRAVY (calculated)

-0.475

Length

178 amino acids

Sequence
(BLAST)

001: MTSSTCGREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHIPS APSVPAAHNQ HQQLWFSAPP
101: PVSDNHHHHH HRVFLRTGVL NDTTSDFLSR ETPLHIAASP AAATSSSPRV VEFPMSTASA TTRRGLAIDL NELPPLWL

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.