Factsheet for Zm00001d010676_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000030_P001
Zm00001d015093_P001
Zm00001d017649_P001
Zm00001d029973_P001
Zm00001d029988_P001
Zm00001d043365_P001
Zm00001d047069_P001
Zm00001d049525_P004
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	Zm00001d049525_P004	AT1G32540.1	21798944
AT1G28360.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d000030_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d015093_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d029973_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038584_P001	Maize	nucleus	84.88	82.86
KXG22269	Sorghum	nucleus	86.34	82.71
Os05t0497200-01	Rice	nucleus	55.61	60.32
HORVU1Hr1G067160.1	Barley	nucleus	53.17	56.77
TraesCS1D01G314700.1	Wheat	nucleus	50.73	56.52
TraesCS1B01G326500.1	Wheat	nucleus	50.24	55.98
TraesCS1A01G314200.1	Wheat	nucleus	51.22	55.85
Zm00001d012584_P001	Maize	nucleus	44.88	55.76
GSMUA_Achr8P15820_001	Banana	nucleus	41.95	50.59
Zm00001d043204_P001	Maize	nucleus	45.37	50.0
VIT_10s0003g00130.t01	Wine grape	nucleus	31.22	42.11
PGSC0003DMT400076408	Potato	nucleus	31.22	41.83
Solyc02g077840.1.1	Tomato	nucleus	31.22	41.56
CDY15674	Canola	nucleus	31.22	35.96
Bra030094.1-P	Field mustard	nucleus	31.22	35.96
KRH21385	Soybean	nucleus	28.29	35.58
CDY34107	Canola	nucleus	31.22	35.36
Bra032898.1-P	Field mustard	nucleus	31.22	35.36
CDY30806	Canola	nucleus	30.73	34.43
KRH10926	Soybean	nucleus	28.78	34.3
CDX94610	Canola	nucleus	27.32	33.73
Bra010881.1-P	Field mustard	nucleus	30.24	33.7
CDX90145	Canola	nucleus	30.24	33.7
CDY35734	Canola	nucleus	30.24	33.51
Zm00001d014565_P001	Maize	nucleus	30.73	32.64
AT1G28360.1	Thale cress	nucleus	29.76	32.28
Zm00001d015639_P001	Maize	nucleus	33.17	32.23
Zm00001d053707_P001	Maize	nucleus	32.68	32.21
Zm00001d053859_P001	Maize	nucleus	30.24	31.63
Zm00001d026563_P001	Maize	nucleus	27.32	31.46
Zm00001d001907_P001	Maize	nucleus, plastid	26.83	31.25
Zm00001d036536_P001	Maize	nucleus	29.76	30.96
Zm00001d024324_P001	Maize	nucleus	27.8	30.65
Zm00001d038585_P001	Maize	mitochondrion, nucleus	29.76	27.73
Zm00001d026271_P001	Maize	nucleus, plastid	29.76	27.48
Zm00001d002364_P001	Maize	nucleus, plastid	29.27	27.03
Zm00001d043205_P001	Maize	nucleus	31.22	27.0
Zm00001d012585_P001	Maize	nucleus	31.22	26.56
Zm00001d049364_P001	Maize	nucleus, plastid	25.85	26.11
Zm00001d000339_P001	Maize	nucleus	28.29	24.89
Zm00001d024436_P001	Maize	nucleus	21.46	23.66
Zm00001d050948_P001	Maize	nucleus	29.27	20.41
Zm00001d003871_P001	Maize	plastid	24.88	18.82
Zm00001d007119_P001	Maize	nucleus	26.83	18.58
Zm00001d016623_P001	Maize	nucleus	23.9	18.49
Zm00001d025298_P001	Maize	plastid	24.39	18.38
Zm00001d022488_P001	Maize	nucleus	26.83	17.46

Protein Annotations

EntrezGene:100273194	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:AQK94571.1
UniProt:B4FTI2	EMBL:BT040420	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EMBL:KJ726942	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000067A509	EnsemblPlantsGene:Zm00001d010676
EnsemblPlants:Zm00001d010676_P001	EnsemblPlants:Zm00001d010676_T001	SEG:seg	:	:	:

Description

AP2-EREBP-transcription factor 93Ethylene-responsive transcription factor 12

Coordinates

chr8:-:123949136..123949753

Molecular Weight (calculated)

21616.8 Da

IEP (calculated)

10.692

GRAVY (calculated)

-0.327

Length

205 amino acids

Sequence
(BLAST)

001: MQQMEWDMRG GGHGSAVGDG GPGGRGLTVG GGVALAVGGG DQQRVEAHYR GVRKRPWGRY AAEIRDPWRK TRVWLGTYDT PVEAAMAYDR AAVALRGSKA
101: RTNFTAGRGG ARATPVQARP LPHPALAPGH FSGLDATHSS PWHVVYLPPP RLHQQALAPP MPLVAVAGDV ATSLPSTALE LRTGPKALPF DLNEPPSLLF
201: GSLSP

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.