Factsheet for Zm00001d022488_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007119_P001	Maize	nucleus	79.68	84.8
KXG36907	Sorghum	nucleus	87.62	84.4
Os07t0669500-01	Rice	nucleus, plastid	72.7	72.01
TraesCS2A01G116900.1	Wheat	nucleus	67.94	71.57
TraesCS2D01G118200.1	Wheat	nucleus, plastid	66.98	71.53
TraesCS2B01G136100.1	Wheat	nucleus	68.89	70.68
GSMUA_Achr8P30180_001	Banana	nucleus	32.06	32.37
Zm00001d024436_P001	Maize	nucleus	19.05	32.26
Bra023684.1-P	Field mustard	nucleus, plastid	31.11	31.31
Bra002168.1-P	Field mustard	nucleus, plastid	31.11	30.91
Zm00001d012584_P001	Maize	nucleus	16.19	30.91
CDY58106	Canola	nucleus	32.38	30.72
CDY02618	Canola	nucleus	32.38	30.72
Bra006466.1-P	Field mustard	nucleus, plastid	30.16	30.65
CDY68296	Canola	nucleus	31.11	30.34
CDY13901	Canola	nucleus	32.06	30.06
CDX88931	Canola	nucleus	31.11	29.79
AT5G18560.1	Thale cress	nucleus	32.38	29.31
CDX70826	Canola	nucleus	30.79	29.31
Zm00001d025298_P001	Maize	plastid	25.08	29.04
Solyc01g067540.1.1	Tomato	nucleus	29.52	28.97
KRH11206	Soybean	nucleus	28.25	28.53
KRH50906	Soybean	nucleus	31.11	28.32
Zm00001d036536_P001	Maize	nucleus	17.46	27.92
Zm00001d001907_P001	Maize	nucleus, plastid	15.56	27.84
KRH02219	Soybean	nucleus	31.11	27.68
KRH21045	Soybean	nucleus	28.25	27.64
PGSC0003DMT400058356	Potato	nucleus	29.84	27.57
Zm00001d026563_P001	Maize	nucleus	15.56	27.53
Zm00001d053859_P001	Maize	nucleus	16.83	27.04
Zm00001d026271_P001	Maize	nucleus, plastid	19.05	27.03
Zm00001d014565_P001	Maize	nucleus	16.51	26.94
Zm00001d003871_P001	Maize	plastid	23.17	26.94
Zm00001d010676_P001	Maize	nucleus	17.46	26.83
Zm00001d016623_P001	Maize	nucleus	22.22	26.42
KRH75649	Soybean	nucleus	23.17	26.35
Zm00001d024324_P001	Maize	nucleus	15.56	26.34
Zm00001d043204_P001	Maize	nucleus	15.56	26.34
Zm00001d002364_P001	Maize	nucleus, plastid	18.41	26.13
Zm00001d049364_P001	Maize	nucleus, plastid	16.51	25.62
Zm00001d038584_P001	Maize	nucleus	16.83	25.24
Zm00001d053707_P001	Maize	nucleus	16.51	25.0
Zm00001d015639_P001	Maize	nucleus	16.51	24.64
Zm00001d038585_P001	Maize	mitochondrion, nucleus	16.51	23.64
Zm00001d000339_P001	Maize	nucleus	17.14	23.18
Zm00001d043205_P001	Maize	nucleus	16.83	22.36
Zm00001d012585_P001	Maize	nucleus	16.51	21.58
Zm00001d050948_P001	Maize	nucleus	18.73	20.07
CDY46294	Canola	nucleus	5.08	11.11
Bra032881.1-P	Field mustard	nucleus	4.44	9.72

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:542097	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:B4FGX7
EMBL:BT036365	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EMBL:KJ727547	ProteinID:ONM60792.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00017B71A1
EnsemblPlantsGene:Zm00001d022488	EnsemblPlants:Zm00001d022488_P001	EnsemblPlants:Zm00001d022488_T001	SEG:seg	:	:

Description

branched silkless1 branched silkless1

Coordinates

chr7:+:178605958..178606905

Molecular Weight (calculated)

33334.2 Da

IEP (calculated)

7.105

GRAVY (calculated)

-0.628

Length

315 amino acids

Sequence
(BLAST)

001: MMNTRACGSG SGGRNDQTMM GFSEHPKPAA SGQAQPSPPS SPSERPPAGR GRRRAQEPGR FLGVRRRPWG RYAAEIRDPT TKERHWLGTF DTAQEAALAY
101: DRAALSMKGA QARTNFVYTH AAYNYPPFLA PFHHPSSVQQ QHYGAAPHVG SYGHHHYHHQ GSSAAVVGAS SGECSSALPP VERADGTLLL DRGGGGGHHH
201: HHHHHPEFLF ASADDNSGYL SSVVPESCLR PRSSAAAVED LRRYSDADAY GMGVGLREDV DDLAQMVAGF WGGGAGDADQ LCGGGFPSGG AGDSMAVASS
301: QGSSDGYSPF SFLSH

Best Arabidopsis Sequence Match ( AT5G18560.1 )
(BLAST)

001: MSTSKTLDHN KPFETSQTQM GFALIHQNTS ANTTTTTTTG ERRGRRSKQA EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAHEA ALAYDRAALS
101: MRGTQARTNF VYTPTDVHTI LTNPNLHSLI VSPYNNNQSF LPNSSPQFVI DHHPHYQNYH QPQQPKHTLP QTVLPAASFK TPVRHQSVDI QAFGNSPQNS
201: SSNGSLSSSL DEENNFFFSL TSEEHNKSNN NSGYLDCIVP NHCLKPPPEA TTTQNQAGAS FTTPVASKAS EPYGGFSNSY FEDGEMMMMN HHEFGSCDLS
301: AMITNYGAAA ASMSMEDYGM MEPQDLSSSS IAAFGDVVAD TTGFYSVF

Arabidopsis Description

ERF086PUCHI [Source:UniProtKB/TrEMBL;Acc:A0A178URC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.