Factsheet for Zm00001d038584_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000030_P001
Zm00001d015093_P001
Zm00001d017649_P001
Zm00001d029973_P001
Zm00001d029988_P001
Zm00001d043365_P001
Zm00001d047069_P001
Zm00001d049525_P004
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	Zm00001d049525_P004	AT1G32540.1	21798944
AT1G28360.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT1G28360.1	Zm00001d000030_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d015093_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d029973_P001	AT4G26000.1	21798944
AT1G28360.1	Zm00001d043365_P001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010676_P001	Maize	nucleus	82.86	84.88
KXG22269	Sorghum	nucleus	79.52	78.04
TraesCS1D01G314700.1	Wheat	nucleus	52.86	60.33
Os05t0497200-01	Rice	nucleus	53.81	59.79
TraesCS1A01G314200.1	Wheat	nucleus	52.86	59.04
HORVU1Hr1G067160.1	Barley	nucleus	53.81	58.85
TraesCS1B01G326500.1	Wheat	nucleus	50.95	58.15
Zm00001d012584_P001	Maize	nucleus	44.76	56.97
Zm00001d043204_P001	Maize	nucleus	45.71	51.61
GSMUA_Achr8P15820_001	Banana	nucleus	40.0	49.41
PGSC0003DMT400076408	Potato	nucleus	30.95	42.48
Solyc02g077840.1.1	Tomato	nucleus	30.95	42.21
VIT_10s0003g00130.t01	Wine grape	nucleus	30.0	41.45
KRH21385	Soybean	nucleus	28.57	36.81
KRH10926	Soybean	nucleus	29.05	35.47
CDY15674	Canola	nucleus	29.05	34.27
Bra030094.1-P	Field mustard	nucleus	29.05	34.27
CDY34107	Canola	nucleus	29.52	34.25
Bra032898.1-P	Field mustard	nucleus	29.52	34.25
Bra010881.1-P	Field mustard	nucleus	29.52	33.7
CDX90145	Canola	nucleus	29.52	33.7
CDY35734	Canola	nucleus	29.52	33.51
CDY30806	Canola	nucleus	29.05	33.33
Zm00001d014565_P001	Maize	nucleus	29.52	32.12
Zm00001d026563_P001	Maize	nucleus	27.14	32.02
CDX94610	Canola	nucleus	25.24	31.93
Zm00001d015639_P001	Maize	nucleus	31.9	31.75
AT1G28360.1	Thale cress	nucleus	28.57	31.75
Zm00001d053707_P001	Maize	nucleus	31.43	31.73
Zm00001d053859_P001	Maize	nucleus	29.52	31.63
Zm00001d001907_P001	Maize	nucleus, plastid	25.71	30.68
Zm00001d024324_P001	Maize	nucleus	27.14	30.65
Zm00001d036536_P001	Maize	nucleus	28.57	30.46
Zm00001d038585_P001	Maize	mitochondrion, nucleus	30.0	28.64
Zm00001d002364_P001	Maize	nucleus, plastid	29.05	27.48
Zm00001d043205_P001	Maize	nucleus	30.95	27.43
Zm00001d049364_P001	Maize	nucleus, plastid	26.19	27.09
Zm00001d012585_P001	Maize	nucleus	30.95	26.97
Zm00001d026271_P001	Maize	nucleus, plastid	28.1	26.58
Zm00001d000339_P001	Maize	nucleus	29.05	26.18
Zm00001d024436_P001	Maize	nucleus	21.43	24.19
Zm00001d050948_P001	Maize	nucleus	28.1	20.07
Zm00001d003871_P001	Maize	plastid	24.29	18.82
Zm00001d016623_P001	Maize	nucleus	23.33	18.49
Zm00001d025298_P001	Maize	plastid	23.81	18.38
Zm00001d007119_P001	Maize	nucleus	25.24	17.91
Zm00001d022488_P001	Maize	nucleus	25.24	16.83

Protein Annotations

EntrezGene:103630552	MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1D6M7D0	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:AQK86966.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677
PANTHER:PTHR31677:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00022182AC	EnsemblPlantsGene:Zm00001d038584	EnsemblPlants:Zm00001d038584_P001
EnsemblPlants:Zm00001d038584_T001	SEG:seg	:	:	:	:

Description

AP2-EREBP-transcription factor 42Putative AP2/EREBP transcription factor superfamily protein

Coordinates

chr6:-:160527296..160527928

Molecular Weight (calculated)

21727.9 Da

IEP (calculated)

10.921

GRAVY (calculated)

-0.332

Length

210 amino acids

Sequence
(BLAST)

001: MQQMEWDTRG GGGGGGGGGG GHGGAVGDGG PRGGGLTVGG VAVGVADQQR VEAHYRGVRK RPWGRYAAEI RDPWRKTRVW LGTYDTPVDA AMAYDRAAVA
101: LRGAKARTNF AAGRGSRATP PVQARPLPYP ALAPGHFGVL DGARSSPWHV VYLPPPRLHH AVAPPMPLVA VAGDAASSLP STALELRTGP KALPFDLNEP
201: PSLLLGSRSP

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.