Factsheet for Zm00001d029973_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

plasma membrane: 23508561

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94472	Sorghum	cytosol	94.87	94.03
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	91.52	92.97
TraesCS1B01G229900.1	Wheat	cytosol	83.48	83.3
TraesCS1D01G218700.1	Wheat	cytosol	83.48	83.11
Os10t0564000-01	Rice	cytosol	84.38	82.53
TraesCS1A01G216900.1	Wheat	cytosol	82.59	82.22
HORVU1Hr1G055480.1	Barley	plastid	83.93	74.9
KRH19104	Soybean	nucleus	54.69	56.19
KRH02776	Soybean	nucleus	54.46	55.96
KRH37335	Soybean	cytosol, nucleus	54.24	54.85
KRH12329	Soybean	cytosol, nucleus	54.02	54.75
VIT_11s0052g00030.t01	Wine grape	plastid	55.13	53.0
Solyc07g008490.2.1	Tomato	nucleus	51.79	48.13
PGSC0003DMT400076105	Potato	plastid	46.88	45.45
GSMUA_Achr8P14980_001	Banana	cytosol	56.47	45.18
Solyc05g041740.1.1	Tomato	plastid	20.54	43.81
Bra019133.1-P	Field mustard	cytosol	38.39	43.22
Solyc08g074330.1.1	Tomato	plastid	21.88	43.17
AT4G26000.1	Thale cress	cytosol	47.1	42.63
GSMUA_Achr11P...	Banana	mitochondrion	54.46	42.58
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	44.87	41.88
CDY42768	Canola	cytosol	45.31	41.18
Solyc05g043210.1.1	Tomato	plastid	23.21	41.11
CDX92741	Canola	cytosol	45.09	40.97
PGSC0003DMT400046406	Potato	cytosol	51.79	39.32
Bra013940.1-P	Field mustard	cytosol	34.82	36.71
CDX89376	Canola	cytosol	34.82	36.71
Solyc05g042180.1.1	Tomato	plastid	22.1	36.26
Zm00001d015093_P001	Maize	cytosol	37.72	36.11
CDY65294	Canola	cytosol	34.82	35.54
Zm00001d030968_P006	Maize	extracellular	37.28	32.87
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	22.1	30.94
Zm00001d003290_P002	Maize	mitochondrion	13.62	26.64
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	38.84	26.48
Zm00001d029328_P002	Maize	nucleus	24.78	20.52
Zm00001d014180_P004	Maize	cytosol	29.24	20.25
Zm00001d010815_P001	Maize	mitochondrion	15.18	19.43
Zm00001d024270_P001	Maize	nucleus	20.54	14.56
Zm00001d049390_P001	Maize	nucleus	19.64	13.95
Zm00001d046033_P001	Maize	nucleus	18.53	12.44
Zm00001d009014_P004	Maize	nucleus	18.08	11.49
Zm00001d037055_P003	Maize	nucleus	18.53	11.22
Zm00001d019538_P002	Maize	plastid	16.74	11.11
Zm00001d013963_P002	Maize	nucleus	19.64	10.78
Zm00001d006055_P002	Maize	plastid	14.29	10.26
Zm00001d032597_P006	Maize	golgi, plasma membrane	20.54	9.33

Protein Annotations

EntrezGene:100283534	Gene3D:3.30.1370.10	MapMan:35.1	UniProt:A0A1D6K8P9	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
ProteinID:ONL99898.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0002218C67	EnsemblPlantsGene:Zm00001d029973	EnsemblPlants:Zm00001d029973_P001	EnsemblPlants:Zm00001d029973_T001	SEG:seg

Description

Nucleic acid binding protein

Coordinates

chr1:+:97097237..97100691

Molecular Weight (calculated)

47944.8 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.151

Length

448 amino acids

Sequence
(BLAST)

001: MAESSAAAEV GSPASLPPLV AEEADAAAME EAAAVAKRWP GWPGDSVFRL VVPVLKVGSI IGRKGELIKR LVEETKARVR ILEGPVGATE RIVLVSGKED
101: PDLELPPAMD ALMRVFKRVT GITDGAAEGT QAAATPDVCA ARLLVPGAQA INLIGKQGAT IKAIQESTSA TIRVISVDEH ERPFYVTDDE RIVEIQGDTE
201: KVLKALQAVS NHLRKFLVDH SVLPLFEKTN TTVSQDRNGD GWSDMSRPSI GSAQVNQLPS VLDDYILQVK RDPLYLERES LVDHNIHRSG VSLYGRDPAL
301: STLRPSAVHG AGSLLTQITQ TMQIPLTYAE DIIGVKGANI AYIRANSGAV VTIQESLGSP DDITVEIKGT SSQVQAAQQL IQDSLAAHRE PVRSSYVGAG
401: LDSVYRSSYS QYGSSIYPSS SLPSYSSIDD VSRYPSSGLG GYGSSYRY

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.