CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019133.1-P	Field mustard	cytosol	79.31	98.24
CDY42768	Canola	cytosol	97.36	97.36
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	80.53	82.71
AT4G26000.1	Thale cress	cytosol	82.76	82.42
CDX89376	Canola	cytosol	55.78	64.71
CDY65294	Canola	cytosol	57.2	64.24
KRH02776	Soybean	nucleus	51.93	58.72
KRH19104	Soybean	nucleus	51.52	58.26
KRH12329	Soybean	cytosol, nucleus	51.12	57.01
VIT_11s0052g00030.t01	Wine grape	plastid	53.55	56.65
KRH37335	Soybean	cytosol, nucleus	50.71	56.43
Solyc07g008490.2.1	Tomato	nucleus	47.46	48.55
TraesCS1B01G229900.1	Wheat	cytosol	42.19	46.33
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	41.18	46.03
TraesCS1D01G218700.1	Wheat	cytosol	41.99	46.0
TraesCS1A01G216900.1	Wheat	cytosol	41.78	45.78
Zm00001d029973_P001	Maize	plasma membrane	40.97	45.09
Os10t0564000-01	Rice	cytosol	41.78	44.98
EER94472	Sorghum	cytosol	41.18	44.91
HORVU1Hr1G055480.1	Barley	plastid	42.39	41.63
GSMUA_Achr8P14980_001	Banana	cytosol	46.65	41.07
GSMUA_Achr11P...	Banana	mitochondrion	46.45	39.97
PGSC0003DMT400046406	Potato	cytosol	47.67	39.83
Os02t0125500-00	Rice	cytosol	29.82	33.49
TraesCS6A01G084000.1	Wheat	cytosol	32.25	33.19
TraesCS6B01G113100.1	Wheat	cytosol	31.24	32.98
Zm00001d015093_P001	Maize	cytosol	30.43	32.05
KXG29352	Sorghum	cytosol	32.45	31.01
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	30.83	30.71
CDX74180	Canola	cytosol	32.66	28.6
CDY40663	Canola	cytosol	32.66	28.6
CDY64706	Canola	nucleus	22.31	27.23
CDX99471	Canola	nucleus	11.16	25.58
CDY03018	Canola	nucleus	16.43	17.31
CDX81615	Canola	cytosol	15.82	16.99
CDY60930	Canola	nucleus	17.85	16.54
CDY33769	Canola	nucleus	16.23	16.49
CDX69536	Canola	nucleus	17.65	16.35
CDY49107	Canola	nucleus	15.62	16.21
CDY39336	Canola	mitochondrion	15.01	15.64
CDX70604	Canola	nucleus	18.26	15.52
CDY45180	Canola	cytosol	13.18	15.37
CDX78623	Canola	nucleus	18.46	15.17
CDX78846	Canola	nucleus	17.44	14.98
CDY33460	Canola	nucleus	18.05	13.88
CDX77643	Canola	nucleus	17.85	13.77
CDY52947	Canola	plastid	15.01	12.85
CDY13742	Canola	mitochondrion	16.23	12.78
CDY46555	Canola	plastid	14.81	12.56
CDY25609	Canola	cytosol	15.82	12.56
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	16.02	12.52
CDX89490	Canola	cytosol	15.62	12.44
CDX96185	Canola	nucleus	15.01	11.54
CDX84522	Canola	nucleus	17.24	11.47
CDY27030	Canola	nucleus	15.21	11.28
CDY56908	Canola	nucleus	14.2	11.01
CDY49453	Canola	nucleus	14.2	10.9
CDX99470	Canola	nucleus	5.88	10.7
CDY51849	Canola	cytosol	2.23	10.38

Protein Annotations

EnsemblPlants:CDX92741	EnsemblPlantsGene:GSBRNA2T00154562001	Gene3D:3.30.1370.10	GO:A0A078DTY3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	PFAM:PF00013	PFscan:PS50084	ProteinID:CDX92741	ProteinID:CDX92741.1
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EE6E7F	MapMan:35.1	:	:

Description

BnaC07g39990D

Coordinates

chrLK031873:+:612963..615378

Molecular Weight (calculated)

53008.0 Da

IEP (calculated)

4.626

GRAVY (calculated)

-0.299

Length

493 amino acids

Sequence
(BLAST)

001: MAAVADSAEN GATNFPENEN LTPSGVTASS LLNEASGAFP ESNQPDTLTA ETAPDANDSA AERWPGWPGD CVFRVIVPVS KVGAIIGRKG DIIRKMCEET
101: RARIKVLDGP TTTPDRIVMI SAKEEPEAYM SPAMEAVVRV FRRVSGLPDS DDDEDLQNAG GAFSSVRLLV ASSQAINLIG KQGSSIKSIV ENSGASVRIL
201: SDEDTPFYAA QDERIVDLQG EALKIVKALE GVVGHLRKFL LDHSVVPLFE KQYLARVSQV RQEEPLANNK SALHAALSNA IESDLMARRE ALFLERDTRV
301: ESFVQPSGAS IYSQDPALSA RHSPGLARVS AAFVTQVSQT MQIPFSYAED IIGLEGANIA FIRRRSGATI TIQESPHPDQ ITVEIKGTSS QVQTAQQLIQ
401: EFISNHKEPA SVSGGYARVD TGYVPAYPPQ LSNLQEPLAS SYMGTETGQY RPTAYSQLAG PSASTYTPSL NGQTYGTEYR PASDAGGYNT YNL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.