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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69536 Canola nucleus 92.86 92.86
AT5G15270.2 Thale cress nucleus 83.27 80.84
CDX70604 Canola nucleus 84.02 77.07
CDX78623 Canola nucleus 83.65 74.17
KRG93559 Soybean nucleus 62.97 61.13
VIT_14s0108g01040.t01 Wine grape nucleus 62.59 60.77
KRH40065 Soybean nucleus 61.28 60.37
KRH18467 Soybean nucleus 61.65 59.85
KRH01196 Soybean nucleus 60.9 59.67
KRH58152 Soybean cytosol 13.91 58.27
PGSC0003DMT400003371 Potato nucleus 59.21 58.23
PGSC0003DMT400064701 Potato nucleus 59.21 56.76
Solyc02g088120.2.1 Tomato nucleus 51.69 52.38
Solyc02g067210.2.1 Tomato nucleus 59.02 50.97
VIT_09s0002g00070.t01 Wine grape mitochondrion 12.22 50.78
CDX81615 Canola cytosol 43.8 50.76
CDY33769 Canola nucleus 45.86 50.31
CDY49107 Canola nucleus 44.55 49.89
CDY39336 Canola mitochondrion 43.98 49.47
CDY03018 Canola nucleus 42.86 48.72
VIT_09s0002g00030.t01 Wine grape cytosol, nucleus, plastid 21.05 47.46
CDY45180 Canola cytosol 37.59 47.28
VIT_14s0006g00030.t01 Wine grape cytosol 22.74 42.76
CDY51849 Canola cytosol 8.08 40.57
CDX99471 Canola nucleus 13.35 33.02
CDX78846 Canola nucleus 27.82 25.78
CDY33460 Canola nucleus 29.32 24.34
CDX77643 Canola nucleus 28.95 24.1
CDY46555 Canola plastid 24.62 22.55
CDX99470 Canola nucleus 11.47 22.51
CDY56908 Canola nucleus 26.69 22.33
CDY52947 Canola plastid 24.06 22.22
CDX96185 Canola nucleus 26.5 22.0
CDY49453 Canola nucleus 26.5 21.96
CDY13742 Canola mitochondrion 24.62 20.93
CDY27030 Canola nucleus 26.13 20.9
CDY25609 Canola cytosol 24.06 20.61
CDX89490 Canola cytosol 23.87 20.52
CDX76904 Canola mitochondrion, nucleus, peroxisome, plastid 24.06 20.29
CDX84522 Canola nucleus 27.82 19.97
CDX89376 Canola cytosol 15.23 19.06
CDY49999 Canola cytosol, endoplasmic reticulum, nucleus 16.92 18.75
CDY64706 Canola nucleus 14.1 18.56
CDY65294 Canola cytosol 15.23 18.45
CDY42768 Canola cytosol 16.54 17.85
CDX92741 Canola cytosol 16.54 17.85
CDY40663 Canola cytosol 17.86 16.87
CDX74180 Canola cytosol 17.86 16.87
Protein Annotations
Gene3D:3.30.310.210MapMan:35.1GO:A0A078J833UniProt:A0A078J833EnsemblPlants:CDY60930ProteinID:CDY60930
ProteinID:CDY60930.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00030267001
InterPro:IPR036612InterPro:KH_domInterPro:KH_dom_type_1InterPro:KH_dom_type_1_sfPFAM:PF00013PFscan:PS50084
PANTHER:PTHR10288PANTHER:PTHR10288:SF151SMART:SM00322SUPFAM:SSF54791UniParc:UPI0004EDF50BSEG:seg
Description
BnaC09g54720DBnaC09g54720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J833]
Coordinates
chrLK033932:+:38911..40967
Molecular Weight (calculated)
57772.4 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.467
Length
532 amino acids
Sequence
(BLAST)
001: MSPEHRDTHW KRSRPQSDDD DNGENKRRHR GCGDDRDSPA IDTVFRYLCP VKKIGSVIGR GGDIVKQLRM ETKAKIKIGE AVPGCDERVV TIFSASDATN
101: DGGDGERVLF SPAQDALFRV HDRVVAADGG DGSDGERNVT AKMLVPSDQI GCVLGRGGQV VQNIRSETGA HIRIIKDRNM PLCALSSDEL IQISGEVLIV
201: KKALHQIASR LHENPSRTQN LLSSAPPLMS HSGGPRIVGI APLMDPYARD LSRPLYQTLR NEPPAATDFY IRLVSPADNI AGVIGKGGAL INQLRQETRA
301: TIKVDSARTD GNDCLITISA REVFDDTYSP TIEAAMRLQS KCSDKVERDS GLVSFTTRLL VPSSRIGCLL GKGGAIITEM RRMTKANIRV LGKDNLPKVA
401: SEDDEMVQIS GELDVAKDAL IQITSRLRAN VFDRDGSVST LMPVLPYVPV ALDAGDRLDY DRRDSRRAER PNHYPGGYGS SGLSEGYSRY GAPVGGSSST
501: QYGVYGGYAS GRSGSSGLSS YSSSLRRRNY DY
Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.