Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX69536 | Canola | nucleus | 92.86 | 92.86 |
AT5G15270.2 | Thale cress | nucleus | 83.27 | 80.84 |
CDX70604 | Canola | nucleus | 84.02 | 77.07 |
CDX78623 | Canola | nucleus | 83.65 | 74.17 |
KRG93559 | Soybean | nucleus | 62.97 | 61.13 |
VIT_14s0108g01040.t01 | Wine grape | nucleus | 62.59 | 60.77 |
KRH40065 | Soybean | nucleus | 61.28 | 60.37 |
KRH18467 | Soybean | nucleus | 61.65 | 59.85 |
KRH01196 | Soybean | nucleus | 60.9 | 59.67 |
KRH58152 | Soybean | cytosol | 13.91 | 58.27 |
PGSC0003DMT400003371 | Potato | nucleus | 59.21 | 58.23 |
PGSC0003DMT400064701 | Potato | nucleus | 59.21 | 56.76 |
Solyc02g088120.2.1 | Tomato | nucleus | 51.69 | 52.38 |
Solyc02g067210.2.1 | Tomato | nucleus | 59.02 | 50.97 |
VIT_09s0002g00070.t01 | Wine grape | mitochondrion | 12.22 | 50.78 |
CDX81615 | Canola | cytosol | 43.8 | 50.76 |
CDY33769 | Canola | nucleus | 45.86 | 50.31 |
CDY49107 | Canola | nucleus | 44.55 | 49.89 |
CDY39336 | Canola | mitochondrion | 43.98 | 49.47 |
CDY03018 | Canola | nucleus | 42.86 | 48.72 |
VIT_09s0002g00030.t01 | Wine grape | cytosol, nucleus, plastid | 21.05 | 47.46 |
CDY45180 | Canola | cytosol | 37.59 | 47.28 |
VIT_14s0006g00030.t01 | Wine grape | cytosol | 22.74 | 42.76 |
CDY51849 | Canola | cytosol | 8.08 | 40.57 |
CDX99471 | Canola | nucleus | 13.35 | 33.02 |
CDX78846 | Canola | nucleus | 27.82 | 25.78 |
CDY33460 | Canola | nucleus | 29.32 | 24.34 |
CDX77643 | Canola | nucleus | 28.95 | 24.1 |
CDY46555 | Canola | plastid | 24.62 | 22.55 |
CDX99470 | Canola | nucleus | 11.47 | 22.51 |
CDY56908 | Canola | nucleus | 26.69 | 22.33 |
CDY52947 | Canola | plastid | 24.06 | 22.22 |
CDX96185 | Canola | nucleus | 26.5 | 22.0 |
CDY49453 | Canola | nucleus | 26.5 | 21.96 |
CDY13742 | Canola | mitochondrion | 24.62 | 20.93 |
CDY27030 | Canola | nucleus | 26.13 | 20.9 |
CDY25609 | Canola | cytosol | 24.06 | 20.61 |
CDX89490 | Canola | cytosol | 23.87 | 20.52 |
CDX76904 | Canola | mitochondrion, nucleus, peroxisome, plastid | 24.06 | 20.29 |
CDX84522 | Canola | nucleus | 27.82 | 19.97 |
CDX89376 | Canola | cytosol | 15.23 | 19.06 |
CDY49999 | Canola | cytosol, endoplasmic reticulum, nucleus | 16.92 | 18.75 |
CDY64706 | Canola | nucleus | 14.1 | 18.56 |
CDY65294 | Canola | cytosol | 15.23 | 18.45 |
CDY42768 | Canola | cytosol | 16.54 | 17.85 |
CDX92741 | Canola | cytosol | 16.54 | 17.85 |
CDY40663 | Canola | cytosol | 17.86 | 16.87 |
CDX74180 | Canola | cytosol | 17.86 | 16.87 |
Protein Annotations
Gene3D:3.30.310.210 | MapMan:35.1 | GO:A0A078J833 | UniProt:A0A078J833 | EnsemblPlants:CDY60930 | ProteinID:CDY60930 |
ProteinID:CDY60930.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00030267001 |
InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFscan:PS50084 |
PANTHER:PTHR10288 | PANTHER:PTHR10288:SF151 | SMART:SM00322 | SUPFAM:SSF54791 | UniParc:UPI0004EDF50B | SEG:seg |
Description
BnaC09g54720DBnaC09g54720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J833]
Coordinates
chrLK033932:+:38911..40967
Molecular Weight (calculated)
57772.4 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.467
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPEHRDTHW KRSRPQSDDD DNGENKRRHR GCGDDRDSPA IDTVFRYLCP VKKIGSVIGR GGDIVKQLRM ETKAKIKIGE AVPGCDERVV TIFSASDATN
101: DGGDGERVLF SPAQDALFRV HDRVVAADGG DGSDGERNVT AKMLVPSDQI GCVLGRGGQV VQNIRSETGA HIRIIKDRNM PLCALSSDEL IQISGEVLIV
201: KKALHQIASR LHENPSRTQN LLSSAPPLMS HSGGPRIVGI APLMDPYARD LSRPLYQTLR NEPPAATDFY IRLVSPADNI AGVIGKGGAL INQLRQETRA
301: TIKVDSARTD GNDCLITISA REVFDDTYSP TIEAAMRLQS KCSDKVERDS GLVSFTTRLL VPSSRIGCLL GKGGAIITEM RRMTKANIRV LGKDNLPKVA
401: SEDDEMVQIS GELDVAKDAL IQITSRLRAN VFDRDGSVST LMPVLPYVPV ALDAGDRLDY DRRDSRRAER PNHYPGGYGS SGLSEGYSRY GAPVGGSSST
501: QYGVYGGYAS GRSGSSGLSS YSSSLRRRNY DY
101: DGGDGERVLF SPAQDALFRV HDRVVAADGG DGSDGERNVT AKMLVPSDQI GCVLGRGGQV VQNIRSETGA HIRIIKDRNM PLCALSSDEL IQISGEVLIV
201: KKALHQIASR LHENPSRTQN LLSSAPPLMS HSGGPRIVGI APLMDPYARD LSRPLYQTLR NEPPAATDFY IRLVSPADNI AGVIGKGGAL INQLRQETRA
301: TIKVDSARTD GNDCLITISA REVFDDTYSP TIEAAMRLQS KCSDKVERDS GLVSFTTRLL VPSSRIGCLL GKGGAIITEM RRMTKANIRV LGKDNLPKVA
401: SEDDEMVQIS GELDVAKDAL IQITSRLRAN VFDRDGSVST LMPVLPYVPV ALDAGDRLDY DRRDSRRAER PNHYPGGYGS SGLSEGYSRY GAPVGGSSST
501: QYGVYGGYAS GRSGSSGLSS YSSSLRRRNY DY
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.