CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78846	Canola	nucleus	93.02	34.84
Bra013302.1-P	Field mustard	nucleus	93.02	34.13
AT4G18375.2	Thale cress	nucleus	62.33	22.11
CDX77643	Canola	nucleus	61.4	20.66
CDY33460	Canola	nucleus	60.0	20.12
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	51.63	17.82
KRH58669	Soybean	endoplasmic reticulum, nucleus	47.91	16.59
KRH42565	Soybean	nucleus	47.44	16.32
PGSC0003DMT400076798	Potato	nucleus	46.98	16.29
Solyc08g048500.2.1	Tomato	nucleus	46.51	16.21
Zm00001d024270_P001	Maize	nucleus	47.44	16.14
OQU80050	Sorghum	nucleus	46.51	15.9
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	47.44	15.67
TraesCS3A01G512500.1	Wheat	nucleus	45.12	15.37
TraesCS3D01G519700.1	Wheat	nucleus	44.65	15.21
TraesCS3B01G580700.1	Wheat	nucleus	44.65	15.21
Zm00001d049390_P001	Maize	nucleus	44.65	15.21
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	48.37	15.05
TraesCS4A01G333900.1	Wheat	nucleus	43.72	14.87
CDY64706	Canola	nucleus	27.91	14.85
TraesCS5D01G538200.3	Wheat	nucleus	43.26	14.76
TraesCS5B01G551800.1	Wheat	nucleus	43.26	14.74
HORVU5Hr1G121900.1	Barley	nucleus	43.26	14.72
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	43.26	14.72
CDY39336	Canola	mitochondrion	32.09	14.59
CDY49107	Canola	nucleus	32.09	14.53
CDY03018	Canola	nucleus	30.7	14.1
CDY33769	Canola	nucleus	30.7	13.61
CDX81615	Canola	cytosol	28.84	13.51
CDX69536	Canola	nucleus	33.02	13.35
CDY60930	Canola	nucleus	33.02	13.35
CDX89376	Canola	cytosol	24.65	12.47
CDY65294	Canola	cytosol	24.65	12.07
CDX70604	Canola	nucleus	32.09	11.9
CDX78623	Canola	nucleus	32.56	11.67
CDY45180	Canola	cytosol	22.79	11.58
CDY42768	Canola	cytosol	25.58	11.16
CDX92741	Canola	cytosol	25.58	11.16
CDX74180	Canola	cytosol	28.37	10.83
CDY40663	Canola	cytosol	28.37	10.83
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	24.19	10.83
CDY46555	Canola	plastid	26.51	9.81
CDY52947	Canola	plastid	26.05	9.72
CDX96185	Canola	nucleus	27.91	9.36
CDY27030	Canola	nucleus	27.91	9.02
CDY56908	Canola	nucleus	26.51	8.96
CDY49453	Canola	nucleus	26.51	8.88
CDX84522	Canola	nucleus	30.23	8.77
CDY13742	Canola	mitochondrion	25.12	8.63
CDX89490	Canola	cytosol	24.65	8.56
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	25.12	8.56
CDY25609	Canola	cytosol	24.65	8.53
CDY51849	Canola	cytosol	0.0	0.0
CDX99470	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:A0A078EEC0	EnsemblPlants:CDX99471	ProteinID:CDX99471	ProteinID:CDX99471.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00107819001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	TMHMM:TMhelix	UniParc:UPI0004EF2D02
SEG:seg	:	:	:	:	:

Description

BnaC01g10810D

Coordinates

chrLK031910:-:985511..988224

Molecular Weight (calculated)

23243.6 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.409

Length

215 amino acids

Sequence
(BLAST)

001: MSDRKKRKSN HNNDNKNQRR RFSNANAETI NKEDLVIYRI LCPVGIIGGV IGKSGKVINA NGDTTKAKIK VFDQSPGCTQ RVITIYSSVK EKVDVTETET
101: EPLCCAQYAL LRVHDTIVSC VESAAGGEKN GNKNEECRLL VPSSQASGVI GKAGAVIKSI RRRTGASVEV DSKDVSDPSH ACALDFDNVV LISGEHESVK
201: KALYAVSATM YKTSP

Best Arabidopsis Sequence Match ( AT4G18375.2 )
(BLAST)

001: MVERKKRKQI QRNNSESNRN QKRRISHDKI NRDELVVYRI LCPIDVVGGV IGKSGKVINA IRHNTKAKIK VFDQLHGCSQ RVITIYCSVK EKQEEIGFTK
101: SENEPLCCAQ DALLKVYDAI VASDEENNTK TNVDRDDNKE CRLLVPFSQS SSLIGKAGEN IKRIRRRTRA SVKVVSKDVS DPSHVCAMEY DNVVVISGEP
201: ESVKQALFAV SAIMYKINPR ENIPLDSTSQ DVPAASVIVP SDLSNSVYPQ TGFYSNQDHI LQQGAGVPSY FNALSVSDFQ GYAETAANPV PVFASSLPVT
301: HGFGGSSRSE ELVFKVLCPL CNIMRVIGKG GSTIKRIREA SGSCIEVNDS RTKCGDDECV IIVTATESPD DMKSMAVEAV LLLQEYINDE DAENVKMQLL
401: VSSKVIGCVI GKSGSVINEI RKRTNANICI SKGKKDDLVE VSGEVSSVRD ALIQIVLRLR EDVLGDKDSV ATRKPPARTD NCSFLSGSSN AGYTLPSFMS
501: SMASTSGFHG YGSFPAGDNV LGSTGPYSYG RLPSSSALEI LIPAHAMSKV MGKGGGNLEN IRRISGAMIE ISASKTSHGD HIALLSGTLE QMRCAENLVQ
601: AFVMST

Arabidopsis Description

KH domain-containing protein At4g18375 [Source:UniProtKB/Swiss-Prot;Acc:P58223]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.