Factsheet for GSMUA_Achr9P18150_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
endoplasmic reticulum 3
nucleus 1
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	74.96	79.57
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	57.89	64.21
KRH42565	Soybean	nucleus	53.84	59.52
KRH58669	Soybean	endoplasmic reticulum, nucleus	53.26	59.26
Solyc08g048500.2.1	Tomato	nucleus	52.53	58.83
PGSC0003DMT400076798	Potato	nucleus	52.39	58.39
TraesCS3A01G512500.1	Wheat	nucleus	53.11	58.16
TraesCS3B01G580700.1	Wheat	nucleus	53.11	58.16
TraesCS3D01G519700.1	Wheat	nucleus	53.11	58.16
HORVU5Hr1G121900.1	Barley	nucleus	52.53	57.44
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	52.39	57.28
TraesCS4A01G333900.1	Wheat	nucleus	52.24	57.12
OQU80050	Sorghum	nucleus	51.81	56.92
TraesCS5D01G538200.3	Wheat	nucleus	51.66	56.67
TraesCS5B01G551800.1	Wheat	nucleus	51.52	56.42
Zm00001d024270_P001	Maize	nucleus	50.94	55.7
Zm00001d049390_P001	Maize	nucleus	50.22	54.99
CDX77643	Canola	nucleus	48.48	52.43
CDX99470	Canola	nucleus	20.55	52.4
CDY33460	Canola	nucleus	48.34	52.11
Bra025032.1-P	Field mustard	nucleus	48.63	52.01
CDX78846	Canola	nucleus	41.68	50.17
Bra013302.1-P	Field mustard	nucleus	41.82	49.32
AT4G18375.2	Thale cress	nucleus	42.55	48.51
CDX99471	Canola	nucleus	15.05	48.37
AT5G46190.2	Thale cress	cytosol	47.18	47.31
GSMUA_Achr6P10750_001	Banana	nucleus	24.6	31.95
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	23.88	31.13
GSMUA_Achr6P13890_001	Banana	cytosol	25.47	26.87
GSMUA_Achr3P21030_001	Banana	nucleus	25.33	26.28
GSMUA_Achr10P...	Banana	cytosol	24.75	25.83
GSMUA_Achr10P...	Banana	nucleus	23.44	24.04
GSMUA_Achr2P15270_001	Banana	nucleus	22.58	22.45
GSMUA_Achr7P01590_001	Banana	nucleus	13.31	20.91
GSMUA_Achr5P03200_001	Banana	cytosol	6.51	16.98
GSMUA_Achr8P14980_001	Banana	cytosol	11.87	14.64
GSMUA_Achr11P...	Banana	mitochondrion	11.72	14.14

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr9G18150_001	EnsemblPlants:GSMUA_Achr9P18150_001
EnsemblPlants:GSMUA_Achr9T18150_001	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M0U1C2
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791
TMHMM:TMhelix	UniParc:UPI000294E20E	SEG:seg	:	:	:

Description

Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr9G18150_001]

Coordinates

chr9:-:12699612..12707425

Molecular Weight (calculated)

74590.2 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.078

Length

691 amino acids

Sequence
(BLAST)

001: MIDTKSVIHM FHLIIHIVTK QNPNPQAQLI SRDSVSQRCL RLGFLLSLAG LIIQSLLVIF SCVYYIHFFI RIMFELGKRQ KRDPDNEGAQ QKKRLGNKDI
101: ISDELVVYRV LCPAGVIGSV IGKSGKVINS IRQQTNAKIK VVNPFPGVDK RVITIYCYVK DKSPVDVDED VLQPLCPAQD ALLKVHDAIV NALANSSEIE
201: KKQEGAHILV PASQTANIIG KFGATIKKLR SKTGANIKIT PKDPSDATHS CAMSFDNFLQ ITGDAEAVKN ALTAVSAVMY KFSPKEEISL DTSVPDLPPI
301: IIPSDIPIIP AGSLYPTADS LLPPGSVPPP IAATHLASEI SGFTDTSNMW PLYPSSLPIV PGYGGPTWSE DLILRILCPS DKIGRVIGKG GSTIKSIRQS
401: SGAKISVDDT KDDTDECVIT VTSTESTNDV KSAAVESVLL LQEKINDQDS DCVNIRLLVP SKVIGCLIGK GGSIITDMRK KTKAIIYISK GEKPKQAAPD
501: NELVEVSGEV GKLRDALVQI ILRLREDVLK DKEGNQNAHK DTSQNVPATD PLHSGSLSVP PVLPTIPPLA PLSYDQRAET ERGLGIFPGS NLFGYNSLQA
601: GENGFGSLSS YPSRTYGGLP AYIEMVIPAN ALPKVMGKGG TNVDNIRKIS GAHIEIVDST ASHFERIARI SGTLEQKRSA ENLIQAFIMS T

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.