Factsheet for GSMUA_Achr7P11520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P10750_001	Banana	nucleus	73.58	73.31
Os03t0376800-02	Rice	nucleus	71.32	69.74
Zm00001d029328_P002	Maize	nucleus	69.62	68.21
KXG39277	Sorghum	nucleus	69.62	68.08
TraesCS4A01G150800.1	Wheat	nucleus	68.87	67.72
VIT_01s0026g02650.t01	Wine grape	nucleus	69.06	63.99
TraesCS4D01G160700.2	Wheat	nucleus	67.74	63.77
TraesCS4B01G166500.2	Wheat	nucleus	67.36	63.41
HORVU4Hr1G049680.1	Barley	nucleus	69.62	63.4
PGSC0003DMT400047374	Potato	nucleus	59.06	58.72
Solyc05g007810.2.1	Tomato	nucleus	58.49	58.27
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.26	54.77
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	48.11	53.24
Bra026852.1-P	Field mustard	nucleus	48.49	52.99
CDY33769	Canola	nucleus	48.49	52.99
AT2G03110.1	Thale cress	cytosol	15.28	52.94
CDX81615	Canola	cytosol	45.66	52.72
CDY49107	Canola	nucleus	46.6	52.0
CDY39336	Canola	mitochondrion	46.04	51.59
CDY03018	Canola	nucleus	43.77	49.57
CDY45180	Canola	cytosol	37.92	47.52
Bra024789.1-P	Field mustard	cytosol	33.21	46.81
CDY51849	Canola	cytosol	8.49	42.45
GSMUA_Achr3P21030_001	Banana	nucleus	39.81	31.68
GSMUA_Achr10P...	Banana	cytosol	32.64	26.13
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	32.08	26.11
GSMUA_Achr6P13890_001	Banana	cytosol	32.26	26.11
GSMUA_Achr7P01590_001	Banana	nucleus	20.38	24.55
GSMUA_Achr10P...	Banana	nucleus	30.75	24.18
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	31.13	23.88
GSMUA_Achr2P15270_001	Banana	nucleus	29.25	22.3
GSMUA_Achr5P03200_001	Banana	cytosol	10.94	21.89
GSMUA_Achr8P14980_001	Banana	cytosol	20.19	19.11
GSMUA_Achr11P...	Banana	mitochondrion	20.19	18.67

Protein Annotations

EnsemblPlants:GSMUA_Achr7P11520_001	EnsemblPlants:GSMUA_Achr7T11520_001	EnsemblPlantsGene:GSMUA_Achr7G11520_001	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000294C99B	UniProt:M0TGP0	MapMan:35.1	:

Description

Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr7G11520_001]

Coordinates

chr7:-:9194323..9196776

Molecular Weight (calculated)

56629.3 Da

IEP (calculated)

6.207

GRAVY (calculated)

-0.453

Length

530 amino acids

Sequence
(BLAST)

001: MAGRRNNNGK RSYSQSDYSD NGGSKRRNPG EERDTYAPGP EDTVFRYLCP GRKIGSIIGR GGEIVKQLRS DTQAKIRIGE TIPGCEERVI TIFSTRRETN
101: TLEDIGDIVC PAQDALFKVH ERLVTDEAVD EDIDGDNPQV TVRLLVPSDQ IGCIIGKGGQ IIQGIRSDTG AQVRILKNEH LPACAISSDE LLQIGGEASV
201: VKKALLQVSS RLHDNPSRSQ HLLSSGTPQM LPVGGQFGVP GTTAPVIGIG QLISSYGGYK GDATVDWPSF YPTPRDETAG KEFSLRLLCP SANIGGVIGK
301: GGVIIKQIRQ ESGASVKVDS SSVEDDCIIT ITAKEFFEDP ISSTIDAAVR LQPRCSEKTE RESGEPSYTT RLLVSTSRIG CLIGKGGSII SEMRRSTQAN
401: IRILSKENVP KVASEDDEMV QISGDIDTAR NALVQVTTRL KANFFERENA LSSVPASIPY HPLPNDASEG SRYGSRDAKA HGRGFSYSGG YGSSSDLVTS
501: DTYGSYGGSQ GGGSSYGAYG GYSSRHGSSG

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.