Factsheet for Os03t0376800-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G150800.1	Wheat	nucleus	84.32	84.79
KXG39277	Sorghum	nucleus	83.76	83.76
Zm00001d029328_P002	Maize	nucleus	82.47	82.62
HORVU4Hr1G049680.1	Barley	nucleus	84.69	78.87
TraesCS4D01G160700.2	Wheat	nucleus	81.18	78.15
TraesCS4B01G166500.2	Wheat	nucleus	80.81	77.8
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	69.74	71.32
GSMUA_Achr6P10750_001	Banana	nucleus	62.92	64.1
VIT_01s0026g02650.t01	Wine grape	nucleus	63.84	60.49
PGSC0003DMT400047374	Potato	nucleus	54.43	55.35
Solyc05g007810.2.1	Tomato	nucleus	54.24	55.26
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.51	55.01
AT2G03110.1	Thale cress	cytosol	15.31	54.25
Bra026852.1-P	Field mustard	nucleus	47.6	53.2
CDY33769	Canola	nucleus	47.6	53.2
CDX81615	Canola	cytosol	44.83	52.94
CDY49107	Canola	nucleus	45.94	52.42
CDY39336	Canola	mitochondrion	45.2	51.8
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	45.76	51.77
CDY03018	Canola	nucleus	44.1	51.07
CDY45180	Canola	cytosol	38.38	49.17
Bra024789.1-P	Field mustard	cytosol	33.58	48.4
CDY51849	Canola	cytosol	8.67	44.34
Os10t0495000-01	Rice	nucleus	36.16	25.72
Os01t0235800-01	Rice	cytosol	21.22	24.57
Os10t0564000-01	Rice	cytosol	19.93	23.58
Os03t0627500-01	Rice	cytosol	20.66	21.96
Os09t0498600-01	Rice	plastid	24.72	21.75
Os06t0342500-01	Rice	cytosol	23.8	19.49
Os02t0125500-00	Rice	cytosol	13.65	16.86
Os10t0414700-01	Rice	nucleus	17.34	15.09
Os07t0439100-01	Rice	cytosol	5.35	12.45
Os12t0597600-01	Rice	cytosol	3.69	12.05
Os08t0200300-02	Rice	plastid	0.74	3.08

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	EntrezGene:4332959	ProteinID:AAL82529.1	ProteinID:ABF96226.1	ProteinID:ABF96227.1
EMBL:AK065781	EMBL:AK067678	EMBL:AK101145	ProteinID:BAF12136.1	ProteinID:BAS84415.1	ProteinID:EAZ27102.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlantsGene:Os03g0376800	EnsemblPlants:Os03t0376800-02	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	UniProt:Q10KN9	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI00000A3001
RefSeq:XP_015632182.1	SEG:seg	:	:	:	:

Description

K Homology, type 1, subgroup domain containing protein. (Os03t0376800-01);K Homology, type 1, subgroup domain containing protein. (Os03t0376800-02);K Homology, type 1, subgroup domain containing protein. (Os03t0376800-03);K Homology, type 1, subgroup domain containing protein. (Os03t0376800-04);Hypothetical conserved gene. (Os03t0376800-05)

Coordinates

chr3:-:14872027..14876653

Molecular Weight (calculated)

57846.9 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.395

Length

542 amino acids

Sequence
(BLAST)

001: MVGPGHRNSH GKRHSDYAEN GGGKRRNPGD DTYAPGPDDT VYRYLCPSRK IGSIIGRGGE IAKQMRADTQ AKIRIGESVS GCDERVITIF SSSRETNTLV
101: DAEDKVCPAQ DALFRVHEKL SIDDDIGNEE SDEGLAQVTV RLLVPSDQIG CIIGKGGHII QGIRSDTGAH IRVLSNENLP ACAISGDELL QISGDSTVVR
201: KALLQVSSRL HDNPSRSQHL LASSMTQPYP VGSHLGSSST APVVGITPLI SSYGGYKGDV AGDWPSIYQP RREESSAKEF SLRLLCAASN VGGVIGKGGG
301: IIKQIRQESG AFIKVDSSNT EDDCIITVSA KEFFEDPVSP TINAAVHLQP RCSEKTDPES AIPSYTTRLL VSTSRIGCLI GKGGSIITEI RRTSRANIRI
401: LSKENVPKVA AEDEEMVQIS GDLDVVRHAL LQITTRLKAN FFEREGALSG FPPVIPYHPL PVGVSEGPKY LGRDTKPLGH DYPYSSGYRG SDDIGPIDSY
501: ASYGSSQVSG GGYGAYGGYS GRSGSSGLSG PSSFSYGKRH GY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.