Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 9
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
plastid: 21433289 plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0376800-02 | Rice | nucleus | 3.08 | 0.74 |
| Os06t0342500-01 | Rice | cytosol | 2.31 | 0.45 |
| Os07t0439100-01 | Rice | cytosol | 0.77 | 0.43 |
| Os03t0627500-01 | Rice | cytosol | 1.54 | 0.39 |
| Os10t0564000-01 | Rice | cytosol | 0.77 | 0.22 |
| Os09t0498600-01 | Rice | plastid | 0.77 | 0.16 |
| Os10t0495000-01 | Rice | nucleus | 0.77 | 0.13 |
| Os01t0235800-01 | Rice | cytosol | 0.0 | 0.0 |
| Os02t0125500-00 | Rice | cytosol | 0.0 | 0.0 |
| Os10t0414700-01 | Rice | nucleus | 0.0 | 0.0 |
| Os12t0597600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:1.1.1.2.9 | EntrezGene:4344899 | EMBL:AK105055 | EMBL:AK121083 | ProteinID:BAD03219.1 | ProteinID:BAF23124.1 |
| ProteinID:BAT04253.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009654 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0042651 | EnsemblPlantsGene:Os08g0200300 | EnsemblPlants:Os08t0200300-02 | PFAM:PF04725 | InterPro:PSII_PsbR |
| PANTHER:PTHR34369 | PANTHER:PTHR34369:SF2 | UniProt:Q6ZBV1 | TMHMM:TMhelix | UniParc:UPI0000226064 | RefSeq:XP_015649785.1 |
| SEG:seg | : | : | : | : | : |
Description
PSII subunit PsbR3, photosystem II subunit PsbR3Similar to Photosystem II 10 kDa polypeptide (Fragment). (Os08t0200300-02)
Coordinates
chr8:-:5806463..5808326
Molecular Weight (calculated)
13226.9 Da
IEP (calculated)
9.601
GRAVY (calculated)
0.080
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSMITSPL VAPARAKGLP SISRRGSSFA IVCSGGKKIK TDKPYGIGGG MSVDIDASGR KSTGKGVYQF VDKYGANVDG YSPIYSPEEW SPTGDTYVGG
101: TTGLLIWAVT LAGLLGGGAL LVYNTSALAG
101: TTGLLIWAVT LAGLLGGGAL LVYNTSALAG
001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
Arabidopsis Description
PSBRPSBR [Source:UniProtKB/TrEMBL;Acc:A0A178WET2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.