Factsheet for Os07t0439100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88922	Sorghum	nucleus, peroxisome, plastid	45.92	16.61
Zm00001d019538_P002	Maize	plastid	45.49	15.7
Os01t0235800-01	Rice	cytosol	19.31	9.62
VIT_03s0038g00420.t01	Wine grape	plastid	24.89	8.95
CDX84522	Canola	nucleus	26.61	8.37
KRH49838	Soybean	plastid	21.03	8.31
PGSC0003DMT400083772	Potato	plastid	22.75	8.24
Solyc01g106020.2.1	Tomato	plastid	22.75	8.2
KRH42077	Soybean	plastid	20.6	8.18
KRH39475	Soybean	plastid	20.17	7.69
KRH21739	Soybean	plastid	23.18	7.55
KRH10613	Soybean	plastid	23.18	7.43
Bra024292.1-P	Field mustard	nucleus	26.61	7.23
Solyc11g010840.1.1	Tomato	plastid	18.88	7.18
PGSC0003DMT400041750	Potato	plastid	18.03	6.85
AT5G64390.3	Thale cress	nucleus	25.32	6.81
Os06t0342500-01	Rice	cytosol	19.31	6.8
CDX89490	Canola	cytosol	17.6	6.62
CDY13742	Canola	mitochondrion	17.6	6.55
AT2G22600.1	Thale cress	mitochondrion	17.6	6.49
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	17.17	6.34
Os09t0498600-01	Rice	plastid	16.74	6.33
Bra030226.1-P	Field mustard	plastid	16.74	6.29
CDY25609	Canola	cytosol	16.74	6.28
Bra038508.1-P	Field mustard	cytosol, plastid	17.17	6.26
Os03t0376800-02	Rice	nucleus	12.45	5.35
AT5G09560.1	Thale cress	cytosol	13.73	5.33
KRH74462	Soybean	nucleus	13.3	5.03
Os10t0495000-01	Rice	nucleus	15.02	4.59
Os03t0627500-01	Rice	cytosol	5.58	2.55
Os10t0564000-01	Rice	cytosol	4.29	2.18
Os10t0414700-01	Rice	nucleus	5.58	2.09
Os02t0125500-00	Rice	cytosol	2.58	1.37
Os08t0200300-02	Rice	plastid	0.43	0.77
Os12t0597600-01	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os07t0439100-01	EnsemblPlantsGene:Os07g0439100	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF146	ProteinID:BAC84296.2
ProteinID:BAD30838.1	ProteinID:BAF21432.1	ProteinID:BAT01261.1	SEG:seg	SUPFAM:SSF54791	UniParc:UPI0000213035
UniProt:Q6Z154	MapMan:35.2	:	:	:	:

Description

KH, type 1 domain containing protein. (Os07t0439100-01)

Coordinates

chr7:-:14774623..14779028

Molecular Weight (calculated)

24957.4 Da

IEP (calculated)

4.340

GRAVY (calculated)

-0.344

Length

233 amino acids

Sequence
(BLAST)

001: MNNTTRTKMK ILEETAVPAC ASQYELVLQI TGEPMNVRDA LSLVCEKLRN HCFSSEKTTY GNGHVPSSAI DELTTSSQNE IDSVQNSISA FDLGCLGSPQ
101: IQKPTIGCGT EINNPINEVE KPANGNGTGI NNLNTGMQNE NGIDVSNHGA TSLEEKKLLR GIKTATITRI TYEVAVCGDN GNDFTMIREM SGADVTAHYP
201: LPETSDGMIV ISGTPDEAQS ALAMFLDLVK EGQ

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.