CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49838	Soybean	plastid	92.33	91.86
KRH21739	Soybean	plastid	67.8	55.66
KRH10613	Soybean	plastid	65.93	53.23
VIT_03s0038g00420.t01	Wine grape	plastid	58.6	53.09
Solyc01g106020.2.1	Tomato	plastid	51.79	47.06
PGSC0003DMT400083772	Potato	plastid	51.45	46.97
KRH39475	Soybean	plastid	37.82	36.33
CDX84522	Canola	nucleus	45.32	35.9
KRH47290	Soybean	mitochondrion, nucleus	32.54	34.17
KRH74462	Soybean	nucleus	34.58	32.95
KRH44614	Soybean	mitochondrion, nucleus	31.35	32.57
Bra024292.1-P	Field mustard	nucleus	46.0	31.51
AT5G64390.3	Thale cress	nucleus	46.34	31.41
KRH52837	Soybean	plastid	33.73	29.29
KRG93559	Soybean	nucleus	27.09	29.01
KRH40065	Soybean	nucleus	26.24	28.52
AT5G09560.1	Thale cress	cytosol	28.96	28.33
KRH01196	Soybean	nucleus	26.06	28.18
KRH62129	Soybean	plastid	32.54	28.17
KRH18467	Soybean	nucleus	26.24	28.1
KRH64403	Soybean	nucleus	29.47	26.86
KRH58152	Soybean	cytosol	5.79	26.77
KRH53532	Soybean	nucleus	29.3	26.58
KRH58669	Soybean	endoplasmic reticulum, nucleus	26.92	25.44
KRH42565	Soybean	nucleus	27.09	25.44
OQU88922	Sorghum	nucleus, peroxisome, plastid	26.41	24.07
Zm00001d019538_P002	Maize	plastid	26.06	22.67
KRH00973	Soybean	nucleus, plastid	13.29	21.55
KRH02776	Soybean	nucleus	15.33	20.64
Os07t0439100-01	Rice	cytosol	8.18	20.6
KRH19104	Soybean	nucleus	14.99	20.18
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	13.29	20.1
KRG97000	Soybean	nucleus	14.65	19.28
KRH12329	Soybean	cytosol, nucleus	14.48	19.23
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	14.31	18.96
KRH37335	Soybean	cytosol, nucleus	14.14	18.74
KRH71306	Soybean	nucleus	14.14	16.77
KRH67322	Soybean	nucleus	14.99	16.64
KRG95633	Soybean	nucleus	15.16	16.57
KRH32136	Soybean	cytosol	14.65	15.22

Protein Annotations

EntrezGene:100786076	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02004788	EnsemblPlantsGene:GLYMA_08G067400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1KQX8	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH42077	ProteinID:KRH42077	ProteinID:KRH42077.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF173	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI0002954306	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:5171574..5177627

Molecular Weight (calculated)

61720.7 Da

IEP (calculated)

8.573

GRAVY (calculated)

-0.085

Length

587 amino acids

Sequence
(BLAST)

001: MADPNSNPNH SNAHVNRSRH YTTHVTFRLL CHASRVGAII GKSGVLIKSL QEATGAKIRI VDAPPDSPDR VILVSAPSVT EDGELSTAQE ALLKVFDRVL
101: DVAAGTEVGD LVVSCRLLAE TSQVGAVIGK AGKVVEKIRM DTGCKIRVLN EGLPAGTAPS DEIVEIEGQL TSVKKALIAV SHRLQDCPPP DRTKMTGSRH
201: YEVVQSETFS VPLESLTNLH IDHHLQRSST LSTLSNRSNG NASGAHKLSA EVNRVSALDP KAYQQEVTFR IICSNDRVGA VIGKGGSIVR ALQNESGAII
301: SVGPSLVECE DRLVTITASE NPESTYSPAQ KAVVLVFSKS VEAGVEKGLE LGSKKEPYVT ARLVVPSNQV GCLLGKGGAI VSEMRKATGA NIRVIGNDQV
401: PMCVSDNDQL VQISGVFSNV QAAIHNATGR LRDHLFVSTQ NSGGARSLSS VLAGGQPTLA ISHSLNRHSL PGLQAPQTVA GINSRGTNGV SRGLISRKGG
501: LELISGSKTA IVTNTTVQIV VPDDVIGSVY GENGSNLARL RQISGAKVIV HEPRPGTSDR TIIISGTPDE TRAAQSLLQA FILAGSS

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.