CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00973	Soybean	nucleus, plastid	90.98	97.51
VIT_15s0021g01940.t01	Wine grape	nucleus	67.01	75.14
PGSC0003DMT400066836	Potato	nucleus, plastid	61.6	53.71
Solyc01g090480.2.1	Tomato	nucleus	61.34	53.6
KRH58152	Soybean	cytosol	8.76	26.77
KRH02776	Soybean	nucleus	22.94	20.41
KRH19104	Soybean	nucleus	22.68	20.18
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	20.88	18.28
KRH12329	Soybean	cytosol, nucleus	20.1	17.65
KRG97000	Soybean	nucleus	20.1	17.49
KRH37335	Soybean	cytosol, nucleus	19.85	17.38
KRH71306	Soybean	nucleus	21.91	17.17
KRH40065	Soybean	nucleus	23.71	17.04
KRH67322	Soybean	nucleus	22.94	16.82
KRG95633	Soybean	nucleus	23.2	16.76
KRH01196	Soybean	nucleus	23.45	16.76
KRG93559	Soybean	nucleus	23.45	16.61
KRH18467	Soybean	nucleus	23.2	16.42
KRH32136	Soybean	cytosol	21.65	14.87
KRH52837	Soybean	plastid	23.97	13.76
KRH49838	Soybean	plastid	20.88	13.73
KRH42077	Soybean	plastid	20.1	13.29
KRH58669	Soybean	endoplasmic reticulum, nucleus	21.13	13.2
KRH53532	Soybean	nucleus	21.65	12.98
KRH42565	Soybean	nucleus	20.88	12.96
KRH44614	Soybean	mitochondrion, nucleus	18.81	12.92
KRH62129	Soybean	plastid	22.42	12.83
KRH64403	Soybean	nucleus	20.88	12.58
KRH47290	Soybean	mitochondrion, nucleus	18.04	12.52
KRH39475	Soybean	plastid	18.81	11.95
KRH21739	Soybean	plastid	21.39	11.61
KRH74462	Soybean	nucleus	18.3	11.53
KRH10613	Soybean	plastid	19.59	10.45

Protein Annotations

EntrezGene:100808887	Gene3D:3.30.1370.10	MapMan:35.2	UniProt:A0A0R0ID14	EMBL:ACUP02006032	EnsemblPlantsGene:GLYMA_09G247400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH40252	ProteinID:KRH40252	ProteinID:KRH40252.1	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF159	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0006EDD95C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:46885288..46890898

Molecular Weight (calculated)

42559.7 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.362

Length

388 amino acids

Sequence
(BLAST)

001: MSQQGQIPIN PMVPPQNPMA TMQVPMPMHM QMQMQMQMPM PMHMPLPMQM QMQMPLPMPL QIPFSVQDTA PSSGKRRRDD ENSGTASAPE QSAAKRAKGQ
101: DVIFRIVVPS RQIGKVIGKE GHRIQKIRED TKATIKIADA IARHEERVII ISSKDNDEKV TDAEKALEQI AHLILKEDDS SLDASKVTAG HVAANTIRLL
201: IAGSQAGGLI GMSGQNIEKL RDSSGASITV LAPNQLPLCA SAHESDRVVQ LSGDVPAVMK ALEEIGCQLR ENPPRQVISI SPTYNYAAIR PSQPYLDPTS
301: VDYVTFEMLI SETMVGGLIG RCGSNISRIR NESGAMIKVY GGKGEQKHRQ IQFGGSAQQV ALAKQRVDEY IYSQLIQQTG TQQSVFQR

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.