CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19104	Soybean	nucleus	95.41	95.41
KRH12329	Soybean	cytosol, nucleus	77.29	76.24
KRH37335	Soybean	cytosol, nucleus	76.61	75.39
VIT_11s0052g00030.t01	Wine grape	plastid	74.31	69.53
Solyc07g008490.2.1	Tomato	nucleus	61.24	55.39
Bra019133.1-P	Field mustard	cytosol	50.23	55.03
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	55.5	54.88
Zm00001d029973_P001	Maize	plasma membrane	55.96	54.46
TraesCS1D01G218700.1	Wheat	cytosol	55.96	54.22
TraesCS1B01G229900.1	Wheat	cytosol	55.73	54.12
TraesCS1A01G216900.1	Wheat	cytosol	55.73	54.0
EER94472	Sorghum	cytosol	55.96	53.98
Os10t0564000-01	Rice	cytosol	56.42	53.71
AT4G26000.1	Thale cress	cytosol	59.86	52.73
CDY42768	Canola	cytosol	58.95	52.13
CDX92741	Canola	cytosol	58.72	51.93
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	55.96	50.83
HORVU1Hr1G055480.1	Barley	plastid	56.42	49.0
GSMUA_Achr8P14980_001	Banana	cytosol	61.93	48.21
PGSC0003DMT400046406	Potato	cytosol	62.39	46.1
GSMUA_Achr11P...	Banana	mitochondrion	59.86	45.55
Bra013940.1-P	Field mustard	cytosol	43.12	44.24
CDX89376	Canola	cytosol	43.12	44.24
CDY65294	Canola	cytosol	43.35	43.05
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	38.99	38.37
KRG97000	Soybean	nucleus	38.76	37.89
TraesCS6B01G113100.1	Wheat	cytosol	38.76	36.19
Os02t0125500-00	Rice	cytosol	36.01	35.76
Zm00001d015093_P001	Maize	cytosol	38.3	35.68
KXG29352	Sorghum	cytosol	42.2	35.66
TraesCS6A01G084000.1	Wheat	cytosol	38.76	35.28
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	38.07	33.54
KRH67322	Soybean	nucleus	40.37	33.27
KRG95633	Soybean	nucleus	40.14	32.59
KRH71306	Soybean	nucleus	36.01	31.72
KRH32136	Soybean	cytosol	38.76	29.91
KRH58152	Soybean	cytosol	8.26	28.35
KRH00973	Soybean	nucleus, plastid	20.41	24.59
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	20.41	22.94
KRH01196	Soybean	nucleus	23.17	18.6
KRH40065	Soybean	nucleus	22.71	18.33
KRG93559	Soybean	nucleus	22.71	18.07
KRH18467	Soybean	nucleus	22.48	17.88
KRH49838	Soybean	plastid	21.56	15.93
KRH42077	Soybean	plastid	20.64	15.33
KRH42565	Soybean	nucleus	20.87	14.56
KRH58669	Soybean	endoplasmic reticulum, nucleus	20.18	14.17
KRH74462	Soybean	nucleus	19.95	14.12
KRH39475	Soybean	plastid	19.5	13.91
KRH52837	Soybean	plastid	21.33	13.76
KRH62129	Soybean	plastid	21.33	13.72
KRH47290	Soybean	mitochondrion, nucleus	16.97	13.24
KRH44614	Soybean	mitochondrion, nucleus	16.74	12.92
KRH53532	Soybean	nucleus	18.81	12.67
KRH21739	Soybean	plastid	20.64	12.59
KRH64403	Soybean	nucleus	18.35	12.42
KRH10613	Soybean	plastid	19.27	11.55

Protein Annotations

EntrezGene:100807645	Gene3D:3.30.1370.10	MapMan:35.1	EMBL:ACUP02010323	EnsemblPlantsGene:GLYMA_17G058900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MSL2	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH02776	ProteinID:KRH02776	ProteinID:KRH02776.1	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000233E092
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:4472806..4477548

Molecular Weight (calculated)

46702.4 Da

IEP (calculated)

5.315

GRAVY (calculated)

-0.152

Length

436 amino acids

Sequence
(BLAST)

001: MATLDPIQNG VSSDNPAAEP SSTPAEDPTP DPAAAEKRWP GWPGHCVFRL IVPVLKVGSI IGRKGELIKK TCEETKARIR VLDGAVGTSD RIVLISGKEE
101: PEAPLSPAMN AVIRVFKRVS GFSEIDAENK ASAVAFCSVR LLVASTQAIN LIGKQGSLIK SIQENTGASV RVLSGDEVPF YAAADERIVE LQGEAMKVLK
201: ALEAVVGHLR KFLVDNSVLP LFEKTYNATI SQEHQADTTW VDKPSLHSAS QPSIVTDLPL STKRDSLFAD RESQLDSLLP PSTMSIYGQD SSLSGLRSSA
301: LSRPSAPPIV TTVIQTMQIP LSYAEDIIGI QGTNIEYIRC TSGAILTVQE SPVPDEIIVE IKGTSSQVQT AQQLIQEVIS NHKEPLASNY SRLDTGLRSS
401: YPQLGSSSYS SSSLSSQPYS GGYGSSGLGG YRTFRL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.