Factsheet for GSMUA_Achr11P00310_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P14980_001	Banana	cytosol	71.55	73.21
KRH19104	Soybean	nucleus	45.72	60.09
KRH02776	Soybean	nucleus	45.55	59.86
VIT_11s0052g00030.t01	Wine grape	plastid	47.82	58.8
KRH12329	Soybean	cytosol, nucleus	44.33	57.47
KRH37335	Soybean	cytosol, nucleus	43.46	56.21
Zm00001d029973_P001	Maize	plasma membrane	42.58	54.46
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	41.88	54.42
TraesCS1A01G216900.1	Wheat	cytosol	42.58	54.22
TraesCS1B01G229900.1	Wheat	cytosol	42.41	54.12
TraesCS1D01G218700.1	Wheat	cytosol	42.41	54.0
EER94472	Sorghum	cytosol	42.58	53.98
Os10t0564000-01	Rice	cytosol	42.76	53.49
Solyc07g008490.2.1	Tomato	nucleus	43.28	51.45
HORVU1Hr1G055480.1	Barley	plastid	45.03	51.39
Bra019133.1-P	Field mustard	cytosol	33.33	47.99
CDY42768	Canola	cytosol	40.14	46.65
AT4G26000.1	Thale cress	cytosol	40.14	46.46
CDX92741	Canola	cytosol	39.97	46.45
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	38.74	46.25
Solyc08g074330.1.1	Tomato	plastid	18.15	45.81
PGSC0003DMT400076105	Potato	plastid	36.65	45.45
Solyc05g041740.1.1	Tomato	plastid	16.23	44.29
GSMUA_Achr7P01590_001	Banana	nucleus	32.98	42.95
PGSC0003DMT400046406	Potato	cytosol	43.8	42.54
Solyc05g043210.1.1	Tomato	plastid	18.32	41.5
TraesCS6B01G113100.1	Wheat	cytosol	31.76	38.97
Bra013940.1-P	Field mustard	cytosol	28.62	38.59
CDX89376	Canola	cytosol	28.62	38.59
Os02t0125500-00	Rice	cytosol	29.49	38.5
CDY65294	Canola	cytosol	29.32	38.27
TraesCS6A01G084000.1	Wheat	cytosol	31.76	38.0
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	32.64	37.78
GSMUA_Achr5P03200_001	Banana	cytosol	17.45	37.74
Solyc05g042180.1.1	Tomato	plastid	17.98	37.73
Zm00001d015093_P001	Maize	cytosol	29.49	36.11
KXG29352	Sorghum	cytosol	31.41	34.88
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	17.45	31.25
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	18.67	20.19
GSMUA_Achr6P10750_001	Banana	nucleus	16.75	18.05
GSMUA_Achr3P21030_001	Banana	nucleus	16.4	14.11
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	15.18	13.36
GSMUA_Achr10P...	Banana	nucleus	15.71	13.35
GSMUA_Achr10P...	Banana	cytosol	15.36	13.29
GSMUA_Achr6P13890_001	Banana	cytosol	15.18	13.28
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	14.14	11.72
GSMUA_Achr2P15270_001	Banana	nucleus	13.09	10.79

Protein Annotations

EnsemblPlants:GSMUA_Achr11P00310_001	EnsemblPlants:GSMUA_Achr11T00310_001	EnsemblPlantsGene:GSMUA_Achr11G00310_001	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000295FFB1	UniProt:M0RN62	MapMan:35.1	:	:

Description

Putative Poly(rC)-binding protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G00310_001]

Coordinates

chr11:-:179458..186516

Molecular Weight (calculated)

61826.3 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.362

Length

573 amino acids

Sequence
(BLAST)

001: MKHLITPKPF HAANPTRSLR LTCSDLPYTC ECCLRRDRTT QQHRLRAANP TRSIKVGHGW PLLHRDRTTQ QQRLYPPLEE PLLRRSLSLP TMAAVPDYTA
101: GNETPADAEP MAEAPSSPTA EVETEQNDAD ADVGAEEAAE AAAEEEPARD EAPPEAGASV QGGGGLEVKK WPGWPGDNVF RLIVPLLKVG SIIGRKGELI
201: KKLCEETKAR VRILEGPIGV NDRIVLISGK EEPEAEISPA MDAVVRIFKR VNGISDIAVD GTNLGSAAPG TCSVRLLVAA SQAVNLIGKK GEAIRTIQES
301: SNATVRVLTG SELPLYAAPD ERTVDIQGEP IKVLKALEAV IQHLRKFLVD HSVLPLFEKS YNAPVMQDRS VDAWGENTRS LSHTVQQSSI CNDYGLPLKH
401: DSFFYDHEPQ LDSQIPRSGL ALYGQDPAVP GLRSSALGRS GSALEVTHKM QIPLMHAEDI IGLGGGNIAY IRRSSGAFIT VQETRGLPDE ITVEIKGTTS
501: QVHLAQQLIQ EFIAGRREPL SSSYEGLDTG LRSSYSQLAS PAYRSSSHAS QSYGGGYRSS GLGGGGGYGG YRL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.