Factsheet for Solyc05g043210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g074330.1.1	Tomato	plastid	67.19	74.89
Solyc05g041740.1.1	Tomato	plastid	52.57	63.33
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	68.77	54.38
Solyc05g042180.1.1	Tomato	plastid	50.59	46.89
PGSC0003DMT400076105	Potato	plastid	72.33	39.61
Zm00001d029973_P001	Maize	plasma membrane	41.11	23.21
EER94472	Sorghum	cytosol	39.92	22.35
TraesCS1B01G229900.1	Wheat	cytosol	39.53	22.27
TraesCS1D01G218700.1	Wheat	cytosol	39.13	22.0
TraesCS1A01G216900.1	Wheat	cytosol	39.13	22.0
Os10t0564000-01	Rice	cytosol	39.53	21.83
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	37.55	21.54
Os02t0125500-00	Rice	cytosol	37.15	21.41
Solyc07g008490.2.1	Tomato	nucleus	39.92	20.95
HORVU1Hr1G055480.1	Barley	plastid	39.53	19.92
TraesCS6B01G113100.1	Wheat	cytosol	36.76	19.91
TraesCS6A01G084000.1	Wheat	cytosol	37.15	19.62
GSMUA_Achr8P14980_001	Banana	cytosol	42.29	19.11
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	35.97	18.38
GSMUA_Achr11P...	Banana	mitochondrion	41.5	18.32
KXG29352	Sorghum	cytosol	37.15	18.22
Zm00001d015093_P001	Maize	cytosol	33.6	18.16
Solyc09g066120.2.1	Tomato	nucleus	29.25	15.04
Solyc06g084010.2.1	Tomato	nucleus	18.97	14.86
Solyc01g097010.2.1	Tomato	nucleus	17.79	12.4
Solyc06g084000.2.1	Tomato	nucleus	11.46	12.24
Solyc12g055790.1.1	Tomato	nucleus	10.67	10.84
Solyc05g007810.2.1	Tomato	nucleus	20.16	9.59
Solyc01g090480.2.1	Tomato	nucleus	16.21	9.23
Solyc02g088120.2.1	Tomato	nucleus	18.18	8.76
Solyc02g067210.2.1	Tomato	nucleus	18.97	7.79
Solyc08g048500.2.1	Tomato	nucleus	16.6	6.81
Solyc11g010840.1.1	Tomato	plastid	16.21	6.69
Solyc01g106020.2.1	Tomato	plastid	16.6	6.5
Solyc03g034200.2.1	Tomato	nucleus	17.0	6.08
Solyc03g082980.2.1	Tomato	nucleus	15.81	5.99
Solyc04g077060.2.1	Tomato	nucleus	8.7	4.65
Solyc12g055780.1.1	Tomato	cytosol, nucleus	3.16	2.16

Protein Annotations

EnsemblPlants:Solyc05g043210.1.1	EnsemblPlantsGene:Solyc05g043210.1	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF132	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI00027666D9	UniProt:K4C0K3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5:-:55461048..55462953

Molecular Weight (calculated)

27471.1 Da

IEP (calculated)

6.796

GRAVY (calculated)

0.056

Length

253 amino acids

Sequence
(BLAST)

001: MVYSIVTSSL FAPVIHASSS VWPPLPESLA VRSGSFATEE SVQKWPGWPW DNMFKLVVPV AKVGGIIGRR GEVVNRMCKE TGASIRVHEG PDADQIVLIS
101: GRENPDAEVS PAMDAAIRNF KFVVGLNNDD SGAVAAFVSS KLIEIHGEGT KVLNAFDVVV KLLRKFLVHH SMIPYQPSRP ASAAVSDYQD PYLLDHGTAV
201: DSKTLRSTLP RYGQDIVKKV NVSILFPSRI TKLMQVPLGY AEEIIGAEGC DIA

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.