Factsheet for Solyc06g084000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03200_001	Banana	cytosol	51.48	46.04
PGSC0003DMT400051668	Potato	cytosol	97.05	44.92
Solyc01g097010.2.1	Tomato	nucleus	56.96	37.19
Solyc09g066120.2.1	Tomato	nucleus	75.53	36.38
VIT_07s0141g00800.t01	Wine grape	cytosol	58.65	32.1
GSMUA_Achr7P01590_001	Banana	nucleus	58.23	31.36
KRG95633	Soybean	nucleus	63.29	27.93
KRH67322	Soybean	nucleus	62.03	27.79
KRH32136	Soybean	cytosol	64.98	27.26
Os03t0627500-01	Rice	cytosol	54.01	25.1
EES16283	Sorghum	cytosol	52.32	24.36
KRH71306	Soybean	nucleus	50.63	24.24
Zm00001d030968_P006	Maize	extracellular	51.9	24.21
TraesCS5D01G071000.1	Wheat	nucleus	51.48	23.51
TraesCS4B01G069700.1	Wheat	nucleus	50.63	23.48
TraesCS5B01G066800.1	Wheat	nucleus	51.48	23.46
TraesCS5A01G059500.1	Wheat	cytosol	51.48	23.46
TraesCS4D01G068400.1	Wheat	nucleus	50.63	23.35
TraesCS4A01G245800.1	Wheat	nucleus	50.63	22.86
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	49.79	21.77
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	49.79	17.96
HORVU1Hr1G036280.1	Barley	cytosol	30.38	17.56
Solyc07g008490.2.1	Tomato	nucleus	35.44	17.43
Solyc05g042180.1.1	Tomato	plastid	18.57	16.12
OQU91315	Sorghum	plastid	32.91	16.05
Solyc08g074330.1.1	Tomato	plastid	15.19	15.86
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	29.96	11.85
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	29.96	11.85
TraesCS1D01G134700.1	Wheat	cytosol	29.96	11.83
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	15.61	11.56
Solyc05g043210.1.1	Tomato	plastid	12.24	11.46
EER94248	Sorghum	nucleus	28.27	11.39
Os10t0414700-01	Rice	nucleus	28.69	10.91
Zm00001d014180_P004	Maize	cytosol	29.54	10.82
Solyc12g055780.1.1	Tomato	cytosol, nucleus	13.5	8.65
Solyc04g077060.2.1	Tomato	nucleus	15.61	7.82
Solyc05g007810.2.1	Tomato	nucleus	16.03	7.14
Solyc01g090480.2.1	Tomato	nucleus	12.66	6.76
Solyc02g088120.2.1	Tomato	nucleus	14.77	6.67
Solyc02g067210.2.1	Tomato	nucleus	16.88	6.49
Solyc08g048500.2.1	Tomato	nucleus	16.03	6.16
Solyc03g034200.2.1	Tomato	nucleus	17.3	5.8
Solyc03g082980.2.1	Tomato	nucleus	13.92	4.94
Solyc01g106020.2.1	Tomato	plastid	12.66	4.64
Solyc05g041740.1.1	Tomato	plastid	3.8	4.29
Solyc11g010840.1.1	Tomato	plastid	10.13	3.92
Zm00001d003290_P002	Maize	mitochondrion	3.38	3.49
Zm00001d010815_P001	Maize	mitochondrion	3.38	2.29
Solyc06g084010.2.1	Tomato	nucleus	1.27	0.93
Solyc12g055790.1.1	Tomato	nucleus	0.0	0.0
Os12t0597600-01	Rice	cytosol	0.0	0.0
HORVU1Hr1G036300.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g084000.2.1	EnsemblPlantsGene:Solyc06g084000.2	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF155	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI000276B7D0	UniProt:K4CAQ5	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:-:49270228..49273126

Molecular Weight (calculated)

25091.3 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.562

Length

237 amino acids

Sequence
(BLAST)

001: MIAGHLRKFL VDRSVIGLFE KLMQMPNAHA HQNMPPPGPN QPWGPPPSSF PMSAGGPGYG ANHQYMPPPR QFDNYFPRVD MHQDKQPHQG PPVYGRDASM
101: GAHGNAQPQQ SIVSKVTQNI QIPLSYADAV IGASGSNISY IRRASGATIA VQETRGVPGE MTVEINGSAS QVQTAQQLVQ NSIADATSSM QNTAAGPPSQ
201: GYNPYPSQGP VYSSSTGHAG HAPSADYGSV YGGSYGY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.